Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaaaaacttctattttgaaaca...

Basic information

species Vitis vinifera
transcript Vv05s0020g01180.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaaaaacttctattttgaaaca
 ||  ||||| ||||||||||||| || || || |||||||| || |||||||| ||||||||||||||||| |||||||| || || |||||||||||||| |    |         |      | |  |   |  ||   | |  || | |     || |     | |     |  || |   |    |  ||    |
CAACTTGGAGCTGGAATCGTTCAAGGAGAAGATTAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTTCCCTACCTCGTCGGCAACATCGTTGAGgtaaaaaataacaaaaatgccatcctagtttatcagattggatcttctattgtgttgagatacttcttagtttgatatgagatcgtggagtagtgcgtga

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g56000.1 (Oryza sativa), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggc-agtgcgaaaaacttctattttgaaaca--
||| || ||| ||||||| | ||| || || || |||||||| || ||||||||||| |||||||||||||| || |||||||| || |||||||| |||||   || |    || ||  ||    ||  | |  |||  | |||| |  |     |   |   || | |    | || |   |  |    | | || |    
GAACCTTGAGGTGGAATCCTACAAGGAGAAGATCAAGGAGAACCAGGAGAAGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgt---ttgtgcgcgcaccactttgactgggttaccagtgaaatttcatgttcaatttaaggcccaagtagttttaatgtgcggagatcggttctggacatcga

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G032505_T03 (Zea mays), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaaaaacttctattttgaaaca
||| ||||||||||| |||||||| || || || ||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||   ||||| | ||    |     |          | || || || |    | | | |||   |     |  | || |  ||| |  | |  |  |  |
GAACCTGGAGTTGGAGTCGTTCAAGGAGAAGATTAAGGAAAACCAAGAGAAAATTAAGCTCAACAAGCAGCTGCCCTACCTCGTTGGCAACATCGTTGAGgttcattttccttgcattctggaaatccctgcgtgtgattgttgtcttgggttaatttgaggccagggaagtgaatgagtgaaaatgatttggtctatta

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactg--aaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaa-aaacttctattttgaaaca
||| |||||| |||| ||  |||| || || |  |||||||| || |||||||| ||||||||||||||||| || ||||| || || |||||||| |||||  | ||||| | |||  || | |    |||   |  ||| || ||| ||      ||        | ||||   ||  |      ||     | ||     
GAACCTGGAGCTGGAGTCTATCAAGGAGAAGACCAAGGAGAACCAGGAGAAGATTAAGCTCAACAAGCAGCTGCCGTACCTCGTCGGCAACATCGTCGAGgtt-tgtttctcgcctcgattggctgacgctgttgatggttcatcttcttatcccttgtatttggtgactgggtaggtatgtttgggctctcgatctggtt--

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggag--ataaaatggggcagtg--cgaaaaacttctattttgaaaca
|| ||| |||   ||  |  | || |||||||| || |||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||||| || |||||   | || |   ||     | | |||  || |    |   |||     |||  |   ||  ||       ||| | |    | |  ||| | ||| |     
GACTCTCGAGCACGATGCTATGAAGGAAAAAATTAATGAGAATCAGGAGAAGATCAAACTCAATAAACAGCTGCCTTACCTAGTTGGAAACATTGTGGAGgttggtgttgtccacttgtcatttattggatgcatcagtagctttgaatttatttggcaagcaatgtgtcaaggctggggttaacatgcttttgtttcgt----

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S218_133V6.1 (Physcomitrella patens), 5'ss of exon 2
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaaaaacttctat--tttgaaaca-----
    |||||    ||  |    ||||||||||| |||||||||||||||||||||||||| || |||||||| || |||||||| || ||| | || ||||||  | ||  |  ||      | |||  | ||||  |   ||  |||  | |||| ||||   |  |   |||||  ||  | ||| |    || |||  |     
TTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTGTCGGAAACGTAGTGGAGgtgtgtattgattacttttaccgatttt-cggaaacatcggttgccgt--tttcag-ggaggcgatgt---gcagtttgaggaccttttgcggttcgaataatgcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26259299|gb|CA810362.1|CA810362
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349808820|gb|FQ406670.1|FQ406670
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349812353|gb|FQ406374.1|FQ406374
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349808282|gb|FQ403469.1|FQ403469
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349833057|gb|FQ416435.1|FQ416435
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351026753|gb|FQ436406.1|FQ436406
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349812105|gb|FQ410902.1|FQ410902
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351026800|gb|FQ436453.1|FQ436453
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349816275|gb|FQ399385.1|FQ399385
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349811569|gb|FQ409565.1|FQ409565
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349818668|gb|FQ403502.1|FQ403502
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349815538|gb|FQ400694.1|FQ400694
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349818769|gb|FQ409303.1|FQ409303
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349814178|gb|FQ414797.1|FQ414797
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349809052|gb|FQ407501.1|FQ407501
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349810100|gb|FQ401546.1|FQ401546
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351037334|gb|FQ460533.1|FQ460533
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349815049|gb|FQ410272.1|FQ410272
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349814278|gb|FQ398704.1|FQ398704
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTC
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351012252|gb|FQ426974.1|FQ426974
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATAGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349807880|gb|FQ402271.1|FQ402271
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351033839|gb|FQ447877.1|FQ447877
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349809200|gb|FQ398973.1|FQ398973
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349822022|gb|FQ408351.1|FQ408351
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349811159|gb|FQ406103.1|FQ406103
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349822547|gb|FQ412822.1|FQ412822
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351043388|gb|FQ451440.1|FQ451440
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351024771|gb|FQ430596.1|FQ430596
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349819018|gb|FQ411713.1|FQ411713
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351023074|gb|FQ430949.1|FQ430949
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349818376|gb|FQ409151.1|FQ409151
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351047310|gb|FQ451822.1|FQ451822
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349820629|gb|FQ408458.1|FQ408458
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351023695|gb|FQ448246.1|FQ448246
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349818006|gb|FQ407995.1|FQ407995
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351012427|gb|FQ427028.1|FQ427028
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349814949|gb|FQ410172.1|FQ410172
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349809023|gb|FQ407472.1|FQ407472
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGGTGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349817520|gb|FQ407310.1|FQ407310
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|110699646|gb|EE076827.1|EE076827
EST:     CCTTGTTGTG-ACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCTCTAACGTT
genomic: CCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351037562|gb|FQ462545.1|FQ462545
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351041131|gb|FQ444108.1|FQ444108
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349816463|gb|FQ403838.1|FQ403838
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349817057|gb|FQ399804.1|FQ399804
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351040135|gb|FQ425221.1|FQ425221
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349814705|gb|FQ409928.1|FQ409928
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349815856|gb|FQ401012.1|FQ401012
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|351054548|gb|FQ452024.1|FQ452024
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349816484|gb|FQ403859.1|FQ403859
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|352798843|gb|FQ478478.1|FQ478478
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349822553|gb|FQ412828.1|FQ412828
EST:     AGGTCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
EST: gi|349833224|gb|FQ416602.1|FQ416602
EST:     AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAG                         ATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT
genomic: AGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttc ... ggtgttttagATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGgtgatttttcttggctccgtttgttttgactgaaaagtttattttcgtaatatcagtggagataaaatggggcagtgcgaaaaacttctattttgaaaca

- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaac