1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGCGTCTTAGGGAAGAGGAGCTCCAAGGTCTGGGCAAGTCCTCTGCAGGATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttctgtacatggtttactttgacttcttactcttcccatacatttaactgtgtttctctgcacagaaagacctagctagaccccataaaattaa...
species | Vitis vinifera |
transcript | Vv05s0020g01130.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGCCCTCGAGTTGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAG GTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCCEST: gi|351015573|gb|FQ426815.1|FQ426815
genomic: GATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttct ... acattttcagGTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCC
EST: GATGCCCTCGAGTTGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAG GTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCCEST: gi|349826150|gb|FQ415955.1|FQ415955
genomic: GATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttct ... acattttcagGTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCC
EST: GATGCCCTCGAGTTGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAG GTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCCEST: gi|351022470|gb|FQ445245.1|FQ445245
genomic: GATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttct ... acattttcagGTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCC
EST: GATGCCCTCGAGTTGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAG GTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCC
genomic: GATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttct ... acattttcagGTGTTAAGTAATTGCCGATCAATCTCAAAATTTGGGGCTCCATTCCGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCGTCTTAGGGAAGAGGAGCTCCAAGGTCTGGGCAAGTCCTCTGCAGGATGCCCTCAAGTCGTTATACTGGTGCCAACTGCTGAGTTGGCTTCTCAGgtcagtttctgtacatggtttactttgacttcttactcttcccatacatttaactgtgtttctctgcacagaaagacctagctagaccccataaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaat