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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATCAAACAACTAAACATGGTGGATCCGGATGAAAAAGACTCCTCTGGAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcagctagctcgaaactttcttcatttcttattcagaaacattgatcaatgcttattgcttcatctgggtgggtgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00600.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137533|gb|CB922871.1|CB922871
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|22008129|gb|BQ793163.1|BQ793163
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|27586715|gb|CB009410.1|CB009410
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30133724|gb|CB919063.1|CB919063
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30135193|gb|CB920531.1|CB920531
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|27582335|gb|CB005030.1|CB005030
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30129616|gb|CB914955.1|CB914955
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30126734|gb|CB912073.1|CB912073
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30134777|gb|CB920115.1|CB920115
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30126128|gb|CB911467.1|CB911467
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30133782|gb|CB919121.1|CB919121
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110398824|gb|EC965300.1|EC965300
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110365492|gb|EC928569.1|EC928569
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30134151|gb|CB919489.1|CB919489
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110397422|gb|EC963157.1|EC963157
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110400019|gb|EC966558.1|EC966558
EST:     CTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: CTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|27583177|gb|CB005872.1|CB005872
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110401288|gb|EC967893.1|EC967893
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|30136361|gb|CB921699.1|CB921699
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|27586984|gb|CB009679.1|CB009679
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
EST: gi|110392750|gb|EC957098.1|EC957098
EST:     GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAG                         ATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA
genomic: GAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcag ... gtgggtgcagATTAAGCTGAGCTTTCTTTATCCGGCGAGCACCGGCCGGAACATGGATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCATCAAACAACTAAACATGGTGGATCCGGATGAAAAAGACTCCTCTGGAAACAATCTCCCGTCTCGAGCTCTCCACATCGTTGGCCCTGACAAGAAGgtttctgcagctagctcgaaactttcttcatttcttattcagaaacattgatcaatgcttattgcttcatctgggtgggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG