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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAATTCAAGCTATGTATAACGAGGGAACCCCAGAGTTTGTTGTTGATCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGgtaaactggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00460.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G36110.1 (Glycine max), 5'ss of exon 3
GAACAAATTCAAGCTATGTATAACGAGGGAACCCCAGAGTTTGTTGTTGATCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGgtaaactggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcag
 ||||| ||||||| |||| ||| || ||| |||| || |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |   | ||  || |||  |     | | |   |  | || |      ||  |     |    |||| ||| ||| | |     
CAACAATTTCAAGCCATGTTTAATGATGGAGCCCCTGAATTTGTTGTTGATCAGAACTTGTATTATCCTGCTGCCACCAATTATGGGTATTACTGTACAGgtaaaatcagaattatatgtcttggcttg-agttcgtggtatattgggtatgaatcatattgactagttatttattatggttag-----

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 3
GAACAAATTCAAGCTATGTATAACGAGGGAACCCCAGAGTTTGTTGTTGATCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGgtaaactggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcag
|||| || | | |  |||  |||||| ||| |||| |||||| ||||||| |||||||||||||| ||| |||||||||| ||||||||||||||  |||||||| |   |    |  |  |||   | | ||  ||| |  |    | |     |  ||  | ||| | |   ||  |          
GAACGAACTGAGGTCATGATTAACGAAGGAGCCCCTGAGTTTTTTGTTGACCAGAACTTGTATTACCCTGCTGCCACCAATTATGGGTATTACTGCTCAGgtaaatttaaaagcaccatattgttacgtttattttga-cagtgcataatattgataatctgttattctctgtgtttag----------

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G03590.1 (Glycine max), 5'ss of exon 1
GAACAAATTCAAGCTATGTATAACGAGGGAACCCCAGAGTTTGTTGTTGATCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGgtaaac-tggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcag
  ||||| | | |  |||  ||| || ||| ||||||||| | ||  | |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||  |   ||   ||| | |||     | ||  |||   |     |     |||| |      ||  ||| | ||||  | |     
--ACAAACTGAGGTCATGATTAATGAAGGAGCCCCAGAGTATTTTTGTTATCAGAACGTGTATTACCCTGCTGCCACCAATTATGGGTATTACTGTACAGgtaaatataaaagcatcatat-tgttacttttattttgacagtgcataa----tattgattatctgtt--attcactgtgtttag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720955|gb|FC070341.1|FC070341
EST:     CCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAG                         GATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGG
genomic: TCAGAACTTGTATTATCCTACTGCCACCAACTATGGGTATTACTGTACAGgtaaactggt ... gcttgttcagGATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGG