Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGAAGGAAATCCATTTACTGCAACATTGTGGGTTGGTTCAGAGGGATTCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAGgtaaggtatgaatttgcttacaattacccattgtaataagaggcaaggtaatactacaaacttatgtcattttgatataagtgatcattctcatcctggattgcaatttcttcgagtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g22550.1 (Oryza sativa), 5'ss of exon 2
TGCTGAAGGAAATCCATTTACTGCAACATTGTGGGTTGGTTCAGAGGGATTCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAGgtaaggtatgaatttgcttacaattacccattgtaataagaggcaaggtaatactacaaacttatgtcattttgatataagtgatcattctcatcctggattgcaatttcttcgagtgcag
| |||||| | || ||||| |||||||| |||| |||| |||| || ||||| ||||| || |||||||||||||| || || ||| |||| || ||||| |||| || | | |||| |||| | | | || | || || | ||||||||
TATTGAAGGGGAGCCTTTTACAGCAACATTATGGGCTGGTGCAGAAGGGTTCCATATGACAGTAAATGGAAGGCATGATACGTCATTTGCATACAGAGAGgtgaggt-tgtctaaaatgacaaaactacattttctaagtgtatcgcatgattgtgaaacctgttaagtttttgatag-------------------------------------------
upper sequence: Vv05s0020g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G04230.1 (Glycine max), 5'ss of exon 2
TGCTGAAGGAAATCCATTTACTGCAACATTGTGGGTTGGTTCAGAGGGATTCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAGgtaaggtatgaatttgcttacaattacccattgtaataagaggcaaggtaatactacaaacttatgtcattttgatataagtgatcattctcatcctggattgcaatttcttcgagtgcag
|||||| || ||||| || ||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||||||||||||| |||||| || | | || | ||| |||| | || |||| ||| | | |||||| | || || | || || | | |||||
TGCTGAGGGTAATCCTTTCACTTCCACATTGTGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACGTCTTTTGCATATAGGGAGgtatggtatgg----------------------------gaagagaaatactgctaaaaacaaaagt--ttttaataggaataatcattttaatgttg---ttcaggttttgtggatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708316|gb|FC057475.1|FC057475EST: TCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAG AAACTTGAACCATGGTTGGTTAGTGGAGTTAAAGTAGCAGGTGGTTTGGAA
genomic: TCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAGgtaaggtatg ... tcgagtgcagAAACTTGAACCATGGTTGGTTAGTGGAGTTAAAGTAGCAGGTGGTTTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGAAGGAAATCCATTTACTGCAACATTGTGGGTTGGTTCAGAGGGATTCCACATGACTGTGAATGGAAGGCATGAAACATCTTTTACATATAGGGAGgtaaggtatgaatttgcttacaattacccattgtaataagaggcaaggtaatactacaaacttatgtcattttgatataagtgatcattctcatcctggattgcaatttcttcgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG