Sequence
atgc intronic sequence ATGC exonic sequenceTGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaagattttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g39720.4 (Oryza sativa), 5'ss of exon 3
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaagattttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt--
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TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGACCGCAGGGATGCAGAAGATGCAATTCGTGATTTAGATGgtaataagcgtagatatttgtctt-tgtagttcatgcaagatagtttcatgttatgcacttctctaatga-gttatctatttcaacttctggcattacatag
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G027105_T07 (Zea mays), 5'ss of exon 3
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaa----agattttcttgtaatggtg-tttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt
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TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTTGATGACCGCAGGGATGCACAAGATGCCATTCGTGAATTGGATGgtacttaataactatagatgcctatttattattactttgtagtgtagagaacttgccttttcttgtaagactttctacaagtaatttatgcagctttctg-----
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G107896_T01 (Zea mays), 5'ss of exon 3
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaagat---tttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt
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TGTATGGGTTGCTAGGAAACCACCAGGGTTTGCCTTCATTGACTTCGATGACCGCAGGGATGCACAAGATGCCATTCGCGATTTGGATGgtacataataactatggatgcctatttattactttgagggtgtttggttccacccaac---taaactttagtccttgtcatatcaaatgtttgaatgataaat
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G29080.2 (Glycine max), 5'ss of exon 3
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaaga-ttttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt
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TGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATCCGTGAATTGGATGgtatgtttagaagaattatgttgttggaatgta-atagaattaaaatcaaaattaaaatgtgcatatatatgtatatttgctacattcttcttatctgcta
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G17930.4 (Glycine max), 5'ss of exon 3
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaaga-ttttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt-
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TGTTTGGGTTGCACGTAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGACGCACAGGATGCTATCCGTGAATTGGATGgtatgttcagaagaattatgttgttggaatgta-atagaattaaaatcaaaattaaatgtgcatag-atatgtttatttacaacattcttcttatctgctaa
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S207_102V6.2 (Physcomitrella patens), 5'ss of exon 2
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaagattttcttgtaatggtgtttat-tgttct-tgaattttctc-tatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt
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TGTATGGGTCGGCCGCAAACCACCGGGCTTTGCTTTTATCGAATTTGAAGATCGAAGAGATGCAGATGATGCCATTCGTGCCTTGAATGgtatgt-tcacgttttgccttgtcatggttttgatacattgtatgtatctggtgacacagtgtatgggtagcccggaagccggcgggttttgcttttgtgg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190703|gb|CF610052.1|CF610052EST: CGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATG GTAAAAATGGCTGGAGAGTTGAGCTTTCTCATAACTCTAGAGGTGGGGGTG
genomic: CGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtatta ... tttggaacagGTAAAAATGGCTGGAGAGTTGAGCTTTCTCATAACTCTAGAGGTGGGGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGACCGTAGAGATGCACAAGATGCAATTCGTGAATTAGATGgtatgtattaaagattttcttgtaatggtgtttattgttcttgaattttctctatgcttgaacctcatgccaacaaccatttcatctcctttctctaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacca