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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTTAAGTTCTCAGATTATTAAAGCCACAGGAGTTGTCACAAAAACTGCTTGGGCAGGGGCTGCATATAATCTCCTATTGTATATGTTAGCTAGTCATgtatgaaacttctctttcctccatttggcctttcattgttcaacattagaatcctgtcaagatatatgagcttcaagggctttgcccttggttgaatttcccgattttgcaatgattcaccttctgttctcgtag

Basic information

species Vitis vinifera
transcript Vv04s0069g00790.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0069g00790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G08170.1 (Glycine max), 5'ss of exon 5
CCCGTTAAGTTCTCAGATTATTAAAGCCACAGGAGTTGTCACAAAAACTGCTTGGGCAGGGGCTGCATATAATCTCCTATTGTATATGTTAGCTAGTCATgtatgaaacttctctttcctccatttggcctttcattgttcaacattagaatcctgtcaagatatatgagcttcaagggctt-tgcccttggttgaatttcccgattttgcaatgattcaccttctgttctcgtag
||| ||||| ||||||||||||||| |||| || || || ||||| || |||||||| || ||||| || ||||| ||| | || ||||||||||||||||||||    |  ||   |   || || || ||||||  ||||| |||||  |  | ||    | |  |   |||||  | || |  | || || |                                         
CCCATTAAGCTCTCAGATTATTAAAACCACCGGTGTGGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTTCTACTTTACATGTTAGCTAGTCATgtatgtt-ttcatcaaccacacaattcgcttttcataattcaaaattagt-tattatc----tctcggcatttcaaatgtttattacttttgtag-----------------------------------------