1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAGAATTGGGTGAAGGTTTCTGGCGAGTTCCTTACTTTTCCTGGTGGTGGAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccattctgatctttctatcctcattacatttctacctgtgtattgttttttattttgcaagtttcattgcttctgttagttttctacactttttc...
species | Vitis vinifera |
transcript | Vv04s0044g01670.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAG TCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTTEST: gi|71854914|gb|DT003969.1|DT003969
genomic: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccatt ... cctgctgcagTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
EST: ATTCATAGAGGAG TCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTTEST: gi|71859577|gb|DT008632.1|DT008632
genomic: ATTCATAGAGGAGgtgaaccatt ... cctgctgcagTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
EST: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAG TCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTTEST: gi|161714754|gb|FC064501.1|FC064501
genomic: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccatt ... cctgctgcagTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
EST: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAG TCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTTEST: gi|71859506|gb|DT008561.1|DT008561
genomic: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccatt ... cctgctgcagTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
EST: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAG TCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
genomic: GAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccatt ... cctgctgcagTCTATGCCTGATATTGCATGGGGAAAACGCAGCCGTGTGGTATTGGATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGAATTGGGTGAAGGTTTCTGGCGAGTTCCTTACTTTTCCTGGTGGTGGAACACAGTTTAAGAATGGTGCTCTTCATTACATTGAATTCATAGAGGAGgtgaaccattctgatctttctatcctcattacatttctacctgtgtattgttttttattttgcaagtttcattgcttctgttagttttctacactttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG