1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttctttcatttttttttagaattaatcatggataatgcttacatctcatcatatttaatttctagttgttcgttatacaattcgatgggaattttgtgtacaagtttcaatttcatataatcatttgcaagtggtggatctgtgacacattttccttttgtcaacag
species | Vitis vinifera |
transcript | Vv04s0044g01290.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGATCATACATCACAAGAATGCCTTAAGCAACTGAACCAG GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCGATACTATEST: gi|161714297|gb|FC063543.1|FC063543
genomic: TGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttcttt ... ttgtcaacagGAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTAT
EST: TTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG GAGATAAATTTACTCAGTCAACTTTCACATCCAA-TATCGTTCAATACTATEST: gi|71863025|gb|DT012080.1|DT012080
genomic: TTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttcttt ... ttgtcaacagGAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTAT
EST: TTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTAT
genomic: TTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttcttt ... ttgtcaacagGAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttctttcatttttttttagaattaatcatggataatgcttacatctcatcatatttaatttctagttgttcgttatacaattcgatgggaattttgtgtacaagtttcaatttcatataatcatttgcaagtggtggatctgtgacacattttccttttgtcaacag
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA