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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGgtattaaagtttatgaatacatctgcacatacacacacacatgtgtgcgcaatattgcatggttggactattctgcattcatgacttacatgagttacat...

Basic information

species Vitis vinifera
transcript Vv04s0044g00630.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711174|gb|EE087403.1|EE087403
EST:     TAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGG                         AACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCTAAAGATAGCTGAT
genomic: TAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGgtattaaagt ... attggagcagAACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCTAAAGATAGCTGAT
EST: gi|27584714|gb|CB007409.1|CB007409
EST:     TAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGG                         AACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCNTAA-GATAGCTGA
genomic: TAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGgtattaaagt ... attggagcagAACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGC-TAAAGATAGCTGA
EST: gi|349822297|gb|FQ412561.1|FQ412561
EST:     TAGAAGTGCTACGCTCCCACCACATCATTCACCGAGACTTGAAACCTGGG                         AACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCTAAAGATAGCTGAT
genomic: TAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGgtattaaagt ... attggagcagAACATTTTACTGTCGGGTCCTGAGAGTGATGTGCTGCTAAAGATAGCTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGAAACCTGGGgtattaaagtttatgaatacatctgcacatacacacacacatgtgtgcgcaatattgcatggttggactattctgcattcatgacttacatgagttacat

- - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca