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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtaggggaatttcttaattctaatatttgcaaccttgtgttggtaaactatttaaaactaaatacagatcgcttccctgcccag

Basic information

species Vitis vinifera
transcript Vv04s0044g00550.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 4
ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtaggggaatttcttaattctaatatttg-caaccttgtgttggtaaactatttaaaactaaatacagatcgcttccctgcccag
 |||||||| ||| | || || || ||||||||||||||||| ||| ||||||| ||||| |||||||| ||||| || || |||  ||||  |  | ||   || ||   | ||||   |  | | | ||  |  || |||||  |  ||||  ||     | | ||   |||
CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTGgtttgttacttctctacttgagagatttaatatgccttttttttttgacaatttagcatgaaatgaagtataatgctct-tacag

upper sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G32190.1 (Glycine max), 5'ss of exon 3
ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtagg-----ggaatttct-taattctaa--tatttgcaaccttgtgttggtaaactatttaaaac-taaatacagatcgcttccctgcccag------
 ||||| |||||||| ||||| |||||||||||||||||||| ||  | |||||||||||||||||||| ||||| || ||||||||||||| |        |||| | | ||| |||     ||| |   ||||  | | ||   || |||||| ||  | | ||   ||      || |       
GTATCAAGAAATTCTAACAGATCCTAGTTATGCTGGTCAGTTTGTACTGATGACAAATCCACATATTGGTAACACTGGTGTAAATTTTGgtaagtatttaatatttatattattttaagtctcttgaatatttgttcttggaagtcatctaaaacctaccttctgaattctgatgcacctactgccag

upper sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtagggga--atttcttaattctaata---tttgcaaccttgtgttggtaaactattt-aaaactaaatacagatcgcttccctgcccag
 ||||| |||||| | ||||| |||||||||||||| ||||| ||  | |||||||||||||||||||| ||||| ||  |||||||||||  |     ||||  |||||| |||     ||| | |  |||| | | || | |||| ||||||   |   | |    |   |  ||||
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttt-tccag

upper sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G39390.1 (Glycine max), 5'ss of exon 3
ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtagggga--atttcttaattctaata---tttgcaaccttgtgttggtaaactatttaaaactaaatacagatcgcttccctgcccag
 ||||| |||||| | || || |||||||||||||| ||||| ||  | |||||||| ||||||||||| || || ||  |||||||||||  | |   | ||  |||||| |||     ||| | |  |||| |   || | |||| |||     |||   |     |  |  ||||
GTATCAAGAAATTTTGACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAACCCACATATTGGGAATACTGGCATAAATTTTGgttagtgtttactttctaattcaaatgagtcttgaatcgatgtggtttgaagccatttgaaaaactctacttttgttcactttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718757|gb|FC067323.1|FC067323
EST:     GTTCGTCTTAACGACAAATCCACATATTGGCAACACGGGGGTAAATTTTG                         ATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTC
genomic: GTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtaggggaat ... ccctgcccagATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTC
EST: gi|37187345|gb|CF606698.1|CF606698
EST:     GTTCGTCTTGATGACAAATCCACATATTGGCAACACGGGGATAAATTTTG                         ATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTC
genomic: GTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtaggggaat ... ccctgcccagATGACGAAGAATCAAGTCAATGCTTTCTTGCTGGTTTAGTGATCAGAAGTC