1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttcttttgtctttctctctcacactttttctttcaatccattttctgagcttgattctcataatatgtgcctatttttagctcaatatgttctt...
species | Vitis vinifera |
transcript | Vv04s0043g00720.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTGCAGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG GCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATEST: gi|110701493|gb|EE079129.1|EE079129
genomic: GTTGCAGCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttct ... ctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
EST: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG GCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATEST: gi|110730292|gb|EE107208.1|EE107208
genomic: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttct ... ctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
EST: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG GCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATEST: gi|18458826|gb|BM437104.1|BM437104
genomic: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttct ... ctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
EST: GCTTCTGTGACCTCAACTGCATCTAAACCTGG GCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAATEST: gi|110376240|gb|EC941289.1|EC941289
genomic: GCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttct ... ctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
EST: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGG GCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
genomic: GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttct ... ctttcctcagGCATGAGCTTCTACTATTTGAAGCCCTTCGAGAAGGCCTGGAAGAAGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAGGCGGATGCTTCTGTGACCTCAACTGCATCTAAACCTGGgtttgtttcttttgtctttctctctcacactttttctttcaatccattttctgagcttgattctcataatatgtgcctatttttagctcaatatgttctt
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