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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag

Basic information

species Vitis vinifera
transcript Vv04s0023g03860.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttcc---ttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| ||||| ||||     |   |   || |||     ||||  | | |  | | ||    |  ||||| ||||||||||  |   ||||                  
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactattattttttctttgtcaattttgggatgttgagttctttttag-atttttattattttattacgtggaatag----------------

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
||||||||||| |||||||| |||||||||||||||||||||||||||||||||  || ||| || || || |||||||||||||||||||      |      || ||  || | |  | ||  |             ||   | | || | ||| | | | | |||| | | ||||||||
GATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGgtaatgctgcg--tgattattgtctctgtgatgttggagc-----------ttggaagttttctctggattt-attgtgttatttgtggaacag

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| ||||| ||||   |    || | || |||| || |   || |    |  | |      ||| ||||  |||||   |||          | | ||||| ||
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgta---ttgttgttattt-tttctttgtccattctgggatgttgagttctttttagatt--tttattattcta--------ttatgtggaatag

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||  || ||| || || || |||||||||||||||||||        |   | || ||      ||||||     |  |     |  ||   | | || | ||| | | | | ||||   | ||||||||
GATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGgtaat------gctgcgtgatta-----ttgtttctg--tgatgttggagcttggaagttttctctggattt-attgtgttacttgtggaacag

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatt-tgttctct-ttggaacag
|||||||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| || || ||||| |||||||||||||| ||||  |  |   | |     ||| |  |          ||  | | | |   |||  ||  |  || | ||  |||| |||| |   ||    |||
GATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCTTGGATTGTGGGATACTGCAGgtaa-tgaatgatgatccaattcataatcc--------ttggtgagaga-gctttccttgatgaatcggtcgaaattatgtttttggtttatgcag

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
|||||||| || ||||||||||| || || || |||||||||||||| ||||| |||||||| || |||||| | |||||||| || ||||    |  | | |   |  || |  || ||  | |    |    |     ||||     | |    || |   |||||| |  |   |||||
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagt-agcggcagctatgggatttgg--ggtctgaaacttttgttttgttgttgt--aaacag

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ11645 (Selaginella moellendorffii), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgta-gcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
||||| || || |||||||| || || ||||| || |||||||||||| ||||   |||||| ||||||||| | ||||| |||||||||  |    | |   |  ||| |    |||     | ||| | |  |  |   | ||  |  ||  |  | | |                     
GATTACGTTCCCACTGTTTTTGATAACTTCAGCGCCAATGTGGTTGTCGATGGCAACACTGTCAACCTTGGGCTCTGGGACACTGCTGgttcgtcaaaaaaaaatctgtgtttgatttgaggatgaatcaatctctcat-ctctggctgcttcgtcacgcag---------------------

upper sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag
||||| || || |||||||| || || ||||| || |||||||||||| ||||   |||||| ||||||||| | ||||| |||||||||  | ||| |   |     |   | |||     | ||| | |  |  |   | ||  |  ||  |  | | |                     
GATTACGTTCCCACTGTTTTTGATAACTTCAGCGCCAATGTGGTTGTCGATGGCAACACTGTCAACCTTGGGCTCTGGGACACTGCTGgtt-cgtcaaaaaaa---aatctgtgtttgaggatgaatcaatctctcat-ctctggctgcttcgtcacgcag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376013|gb|EC941052.1|EC941052
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|110713128|gb|EE088780.1|EE088780
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|110390015|gb|EC954898.1|EC954898
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|110396036|gb|EC961711.1|EC961711
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|87586594|gb|DY474807.1|DY474807
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|110404309|gb|EC969170.1|EC969170
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|33410493|gb|CF216120.1|CF216120
EST:     TGTGGTTGTCGATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG
EST: gi|110366542|gb|EC930452.1|EC930452
EST:     TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTG                         GGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGTGGGGCAGATG
genomic: TGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcac ... tttggaacagGGCAGGAGGATTACAACAGATTGAGACCTTTGAGTTATCGCGGGGCAGATG