Sequence
atgc intronic sequence ATGC exonic sequenceTTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24810.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag------
| |||||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||| | ||| ||||| || |||||||| |||| || ||| || || ||| || | || |||| | | ||| | | | | | | | | | | | |||||
TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatac-ttcgcccagta-atttgttagtgaattattacacttacagatccagtttctcataagttgataaaatgactccccaaaagatga-tgcagttttga
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24820.1 (Glycine max), 5'ss of exon 4
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag------
| |||||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||| | ||| ||||| || |||||||| |||| || ||| || || ||| || | || |||| | | ||| | | | | | | | | | | ||||
TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatac-ttcgcccagta-atttgttagtgaattattacacttacagatccagtttctcataagttgataaaatgactccccaaaagacga-tgcatttttta
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 2
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag------
| |||||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||| | ||| ||||| || |||||||| |||| || ||| || || ||| || | || |||| | | ||| | | | | | | | | | | |||||
TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatac-ttcgcccagta-atttgttagtgaattattacacttacagatccagtttctcataagttgataaaatgactccccaaaagacga-tgcagttttga
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggc--atatgtaatttaacgatgtttaaatgcag----
| |||||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||| | ||| ||||| || |||||||| |||| || ||| || || ||| || | || |||| | | ||| | | | | |||| | | | | | | |||||
TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatac-ttcgcccagta-atttgttagtgaattattacacttacagatccagtttctcataagttgataaaatgtgactccccaaaagatga-tgcagtttt
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24740.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacat-tcaatttctacatgccttaatgttgcca-aatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag---
||| ||| || | |||||||||||||| ||||| ||||||||||| |||||||||||||||| | | ||| |||||| || |||||||| |||| || || | | | | || ||| || | || || | || ||| | || || | | | || |||| | ||| || |
TTTGACAATTATGGGAAGAAGAAGTGATGATCCATCTAGCAAAGATGGTTGCTACATTTGGGAAATTATGGCTACGGCTCTTAATGATATGGTATTGCAGgtacagatgccgaataatttatttctttatcccataataagttttgta-atttttttatacaa-atcagaaaatttaataaataaatgaaagaaaataataa
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06070.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattc-----aatttctacatgccttaatgttgcca-aatttgtatagattaaatcatt--cagcaa-tggcatatgtaatttaacgatgtttaaatgcag
| | |||||||| ||||||||||| || ||||| |||||||| || ||||||||||||||||||| || ||| ||||| | |||||||| |||| |||||| |||| | ||| || || | || || | ||| ||| | || || | | | | || | || |||
TCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGgtatacattcccaacaattcgttaatgactcaacaaaaagatgatgagtttggatgtaatggctaacattaacttaaaaacttgtttctataatattttg------
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G37680.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgta--tagattaaatcattcagca---atggcatatgtaatttaacgatgtttaaatgcag----
| | |||||||| ||||||||||| || |||| ||||||||||| |||||||| || ||||| || || ||| ||||||| || |||||||| | |||| | || || | ||| |||||| | | |||| | || || ||| || | | | | | | | || || | |||| || |
TCTGACATTTTTGGGAAGAAGAAGCGACGATCGATCTAGCAAAGAGTGTTGCTATATATGGGAACTTTTGGCTATGGCTCTTAATGATATGGTCTCGAAGgtacttatgaaa-----aaatgg-ttaatgaagaatagtttgaaaataattttaatattttattaaataagataaaattggttaaaatttatttatatttaaaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698251|gb|EE075586.1|EE075586EST: GCTACATTGGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAG GGGCTCATAGAGAAGGAAAAAATGGATTCCTTCAAAATTCCTCA-TAAACA
genomic: GCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattc ... ttaaatgcagGGGCTCATAGAGGAGGAAAAAATGGATTCCTTCAATATTCCTCAATATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTACATTTGGGAGCTCTTAGCTGTGGCTCTCAACGATATGGTGGCAGAGgtgcacattcaatttctacatgccttaatgttgccaaatttgtatagattaaatcattcagcaatggcatatgtaatttaacgatgtttaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG