Sequence
atgc intronic sequence ATGC exonic sequenceTTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatgttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G37680.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatgttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
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TCTGACATTTTTGGGAAGAAGAAGCGACGATCGATCTAGCAAAGAGTGTTGCTATATATGGGAACTTTTGGCTATGGCTCTTAATGATATGGTCTCGAAGgtacttatgaaaa------aatggttaatg-----aa---gaatagtttgaa------aataattttaatattttattaaata-agataaaattggttaaaatttattta--tatttaaaatt----
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24810.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatg--ttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
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TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatacttc--gcccagtaatttgttagtgaattattacact-tacagatccagtttctcataagttg-----ataaaatgactccccaaaagatg--atgcagttttga-------------------
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24820.1 (Glycine max), 5'ss of exon 4
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatg--ttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
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TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatacttc--gcccagtaatttgttagtgaattattacact-tacagatccagtttctcataagttg-----ataaaatgactccccaaaagacgatgcatttttta---------------------
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 2
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatg--ttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
| |||||||||| ||||||||||| || ||||||||||||||||| || |||| || |||||||| | ||| ||||| ||||||||||| | ||||| ||| | | || ||| || || | | || ||||| | | ||| | | | | ||| | | | ||| | ||
TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatacttc--gcccagtaatttgttagtgaattattacact-tacagatccagtttctcataagttg-----ataaaatgactccccaaaagacg--atgcagttttga-------------------
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatg--ttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
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TCTAACATTTTTGGGAAGAAGAAGCGATGATCCCTCTAGCAAAGATGGTGGCTACATTTGGGAGCTTATGGCTACTGCTCTTAATGATATGGTCTTGCAGgtatacttc--gcccagtaatttgttagtgaattattacact-tacagatccagtttctcataagttgataaaatgtg---actccccaaaagatg--atgcagtttt---------------------
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24740.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtac-gcttttaattctttcatcccttaatgt--tgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
||| ||| || | |||||||||||||| ||||| ||||||||||| ||||||| || ||||| | | ||| |||||| ||||||||||| | |||||| | | | | || || ||| || | || || | || || | || || | ||| | | | ||| ||| |||||| || ||
TTTGACAATTATGGGAAGAAGAAGTGATGATCCATCTAGCAAAGATGGTTGCTACATTTGGGAAATTATGGCTACGGCTCTTAATGATATGGTATTGCAGgtacagatgccgaataatttatttctttatcccataataagttttgta-atttttttatacaa-atcagaaa--atttaataa--ataaatgaaagaaaataataa------------------------
upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06070.1 (Glycine max), 5'ss of exon 3
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatgttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
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TCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGgtatacattc---ccaacaattcgttaatgactcaa---caaaaagatgatga-gtttggatgtaatggcta-acattaact---taaaaacttgtttctataatattttg----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382498|gb|EC946794.1|EC946794EST: GCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAG GGGCTCATAGATGAGGAGAAGATGGATTCCTTCAATATTCCTCAATATACA
genomic: GCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgctttt ... ttaaatgcagGGGCTCATAGATGAGGAGAAGATGGATTCCTTCAATATTCCTCAATATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAACATTTTTAGGAAGAAGAAGTGAAGATCCCTCTAGCAAAGAATGTTGCTATATCTGGGAGCTCTTAGCTGTGGCTCTCAATGATATGGTTTCAGAGgtacgcttttaattctttcatcccttaatgttgccaatttgtatagatcaaatcattcagcaacagcacctgtgtggtaactatatatgaaattgcatgtaaattaattaaccatttttaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT