Sequence
atgc intronic sequence ATGC exonic sequenceGCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttctttgtttgggaaacatttttcgggctttcttacttctgctaaatttattttcttttccctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06100.1 (Glycine max), 5'ss of exon 3
GCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggt------tctttgtttgggaaac-atttttcgggctttcttac---ttctgctaaatttattttcttttccctag
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GCATAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCGGCAGTTAATGCTGACTGTGTATTGGTTCTTGTTGATGCTCGTAAAGCTCCTGAAAAAgtatggagctacatcttcctttacaaaattgtttgttttattttctttcctgtttttccaaatcg--cttcctatctctag
upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 3
GCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttctttgtttg-------ggaaacatttttcgggctttcttact---tctgctaaatttattttcttttccctag
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GCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAgtatggaccttcatcttcctttacaaaattgtttgttctactttctttcttgtttttccaaattg--cttcctatctctag
upper sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G66470.1 (Arabidopsis thaliana), 5'ss of exon 3
GCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttctttgtttgggaaacatttttcgggctttcttacttctgctaaatttattttcttttccctag--------------
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GCACAGGTTAGATACAATGATGATGAAGAATGTCAGAGATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTAATgtatgcttctctgtttg--atttgtttctcatgctttgttagtt----tagtttcctgtcctaatttctggtgttgtgtgcttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546865|gb|CF515097.1|CF515097EST: ATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAG ATTGATGAAGTGTTGGAAGAAGGTGTGGGAAACCTCAAAGATAAACTACCC
genomic: ATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttct ... ttttccctagATTGATGAAGTGTTGGAAGAAGGTGTGGGAAACCTCAAAGATAAACTACCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttctttgtttgggaaacatttttcgggctttcttacttctgctaaatttattttcttttccctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA