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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgattgggaagcccattgatagttttctgtggattttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag

Basic information

species Vitis vinifera
transcript Vv04s0023g02070.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G25190.1 (Glycine max), 5'ss of exon 5
---------GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgga--ttttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag
         ||||  || | ||| | | |  | ||||  |    ||| ||||||||||||||||| ||||||||||||||||||| || ||| ||| |    || |||| | |  |  ||  | || | |||   |   |||| ||  | | | |  || ||   | ||    |  ||  |||| |                                 
GATATGCTGGATCCACATTGTCAGAACTCTAGCTCTTTCACGCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatc--ctaaccagtattgtcct--ttacttgaag---------------------------------

upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06160.1 (Glycine max), 5'ss of exon 10
---------GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgga-ttttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag
         ||||  |  | ||| | | |    || |  | |  ||| ||||||||||||||||| ||||||||||||||||||| || ||| ||| |    || ||   | |  | ||| ||      || |     | |   ||  | |||   || ||      | ||    |  | |                                     
GATATGCTGGATCCACGTTGTCAGAACTCTACCTCCTTCACTCATTCCAGATATCCATATTCCTCAGTTTATGGTGgtatgtgatgtgtgaaacccctgcagtacttcaatataaaatttcaatcaacattttactgcttcgacttgatataat-cctaaccaggcattatcctctactgtag-----------------------------------

upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G25150.1 (Glycine max), 5'ss of exon 3
GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgg--attttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag
               | | |  | || |  |    ||| | ||||||||||||||| ||||||||||||||||||| || ||| ||| |    || |||| | |    |||  | || | |||   |   |||| ||  | | | |  || ||   | ||    |  ||  |||| |                                 
---------------AACTCTAGCTCCTTCACGCATTCCAAATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatc--ctaaccagtattgtcct--ttacttgaag---------------------------------