Sequence
atgc intronic sequence ATGC exonic sequenceCTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g50360.1 (Oryza sativa), 5'ss of exon 3
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattt----tgaagcttcttaggacttacattgg-tagtagaatcgtgcttaggactaaatgctatgttcggttg
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CTTGTCGTGGTGTATGTGGATTTCAAGCTCGACGAGAGCTATACGCCTAGCAAGATCTCTGTCCGGGCCGGCGATGGCTTCCACAATCTCAAGgtgctctc--ctcccacgatagatagttgtgacttgtggcaatgttgcttggcctttatcttagcttttaggcagatgtgaatatctggacttttagttctg---
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G174971_T01 (Zea mays), 5'ss of exon 3
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggactta-cattggtagtagaatcgtgcttaggactaaatgctatgttcggttg----
|| |||| | || |||||||||||||| ||||||||||||||||| || |||||||| || || ||||| ||||||||||||||| | ||||| | || || || ||| | || |||| | |||||||| | || | | ||| | |||| |
CTTGTTGCTCTCTACGTGGATTTCAAGCTCGACGAGAGCTACACGCCCAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTCAAGgtatgcttgttctccatgagatattgttttga----aggatgttcaagaacttgtcgggtgtagtagatttaagcaagagttaacatgttg-attcgtccgagtt
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G054247_T01 (Zea mays), 5'ss of exon 3
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggactta--cattggtagtagaatcgtgcttaggactaaatgctatgttcggttg-----
|| ||||| | || |||||||||||||| |||||||| ||||||||||| |||||||| || || ||||| ||||||||||||||| | ||||| || |||| | | | | |||| | | | | || || || | ||| |||| | | || ||| | |||| |
CTCGTTGTGCTCTACGTGGATTTCAAGCTCGACGAGAGTTACACGCCGAGCAAGATCTCCATCCGGGCCGGGGATGGCTTCCACAACCTAAAGgtac-----gctttttctccatgagat-atcatttgaaggatgttcagaacctagtcggctgtaatagatttaaacaagattatacatgttg-attcgtccgagttg
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G25220.1 (Glycine max), 5'ss of exon 3
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
| |||| | || |||||||||||||| |||||||| ||||||||||| || | || || || ||||| ||||| || |||||||||||||| | | ||| |||| | | ||| ||| || | | | | || | | | | | ||||
TTAATTGTGCTGTACGTGGATTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattct--tattattggtttggatttg--attgggatggtcaattat-ttggtgatgactttgggaacatttttag----------------------
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G08170.1 (Glycine max), 5'ss of exon 1
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
|| |||| |||| |||| ||||||||| |||||||| ||||||||||| || | || || || ||||| ||||| || |||||||||||||| | |||||| | || | || ||||| || ||| || || | | ||| | | | || || |
TTGATTGTGCTTTACGTGGTTTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaa-------atttttattttattggtttgggtttga------ttgggatgattatgcttaattatttggtgtt--gactttgggaacatttttag---
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 4
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcattt-ttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
|| |||| | || |||||||||||||| || ||||| ||||||||||| || | || || || ||||| ||||| || |||||||||||||| | | ||| |||| | | ||| ||| | | || | | ||| ||||| | | | | | ||
TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttttttttattggtttgggtttg--attgggttggttatggttaattat-ttggtgatgactttgggaacatttttag----------------
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G06190.2 (Glycine max), 5'ss of exon 4
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcattt-ttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatg-ctatgttcggttg
|| |||| | || |||||||||||||| || ||||| ||||||||||| || | || || || ||||| ||||| || |||||||||||||| | | ||| |||| | | ||| ||| | | || | | ||| ||||| | | | | | || | || |
TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttttttttattggtttgggtttg--attgggttggttatggttaattat-ttggtgatgactttgggaacatttttaggagattaag--------
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G21840.1 (Glycine max), 5'ss of exon 1
-------CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
|| |||| |||| ||| ||||||||| |||||||| ||||||||||| || | || || || ||||| ||||| || |||||||||||||| | |||||| | || | || ||||| || ||| || | | | | ||| | | | || || |
GTGGCAGTTGATTGTGCTTTACATGGTTTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaa-------atttttattttattggtttgggtttga------ttgggatgattatggttgattatttggtgtt--gactttgggaacatttttag---
upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ26697 (Selaginella moellendorffii), 5'ss of exon 2
-------CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttct---tgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
||| | | ||||| ||||||||||||||||| |||||||||||||| | |||||||| | || | ||| || ||| | |||||| ||| | | || | |||| |||| || ||| || | | ||
CTTGCAGCTGCTGGCGATTTACGTGGATTTCAAGCTGGATGAGAGCTACACGCCCAACAAGATCTCGGTGCGCACTGGAAATTCTTTCTATGACTTGAGGgtatgtttacttttcgttcttcgtctcgactgtgtcaacaaaatctctcttttctcttcctcttccaag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83274535|gb|DV938632.1|DV938632EST: CGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAG GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCC
genomic: CGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacag ... ctgctttcagGAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGTTGTAATTTATGTGGATTTCAAGCTGGACGAGAGCTACACGCCGAGTAAGATCTCTATTCGAGCCGGAGATGGCTTCCACAACTTGAAGgtgactacagcatttttggctcgttcttgtgattttgaagcttcttaggacttacattggtagtagaatcgtgcttaggactaaatgctatgttcggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG