Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAgtaagcaagctcaatttgttactccttgtagcctatttgacagttattcccaaacatggtcagagcaaatcgtgtttttctgttttgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g00760.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G38440.1 (Glycine max), 5'ss of exon 3
AAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAgtaagcaa--gctcaatttgttactccttgtagcctatttgacagttattcccaaacatggtca---gagcaaatcgtgtttttctgttttgcag---------------------------
| | |      |  ||  | | |    |||| ||  || | |  |||||  || | |||||  ||||| |||| ||||||||||||||||||||||| |||||||||   |||  | |  |   ||||| ||       |  ||  | |         |||  |   ||    |  |      || | |  | |                            
AGGAACCACCCGCAAAACCTTTAGCTGAACCATCTTCTTCAGTCTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttcagtcttgtttccttctattagtaatagcaaatgtataagcttttggctacatgattggagtggagcaatcagctacggaaaccttcatgtccaattttctcctgcag

upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G47880.1 (Glycine max), 5'ss of exon 3
AAGCAAAGGATGTTAAGTCATCAAACAAACCTTCGCCTGCGGCTTTGGCTTCTGAGGAATCAATCTCTGAGTTCATTACTCAAGTTGCAAGTCTTGTGAAgtaagcaa--gctcaatttgttactcctt---------gtagcctatttgacagttattcccaaacatggtcagagcaaatcgtgtttttctgttttgcag----------------------
| | |      |  ||| | | |    |||| ||  || | |  |||||  || | |||||  ||||| |||| ||||||||||||||||||||||| |||||||||   ||| || |  |   |||||          ||||  || |   || | ||  |   |||| |  |||   | |       | ||     |                        
AGGAACCACCCGCAAAGCCTTTAGCAGAACCATCTTCTTCAGTGTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAgtaagcagatgcttaagtcttgtttccttctattagtaatagcaaatgtataagctttttgctg-catgattggagtggagcaatcagctatgaaaaacttcatgtccaattttctcctgcag