1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcactcgattcttagtgctattcttcttattaatgtttttatgtagcaataattgttgtttaggtcttgcaattagttcttagttctatttttt...
species | Vitis vinifera |
transcript | Vv04s0023g00380.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|71859056|gb|DT008111.1|DT008111
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|30303671|gb|CB980465.1|CB980465
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|71867156|gb|DT016211.1|DT016211
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|110393823|gb|EC959339.1|EC959339
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|30303609|gb|CB980403.1|CB980403
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: TTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|161715778|gb|FC066182.1|FC066182
genomic: TTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|110369298|gb|EC933452.1|EC933452
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|294966027|gb|GW837394.1|GW837394
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTATCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|77584187|gb|DV221146.1|DV221146
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|110685575|gb|EE062425.1|EE062425
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|110418308|gb|EC984450.1|EC984450
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: TTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTEST: gi|110418385|gb|EC984534.1|EC984534
genomic: TTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcactcgattcttagtgctattcttcttattaatgtttttatgtagcaataattgttgtttaggtcttgcaattagttcttagttctatttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa