Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcactcgattcttagtgctattcttcttattaatgtttttatgtagcaataattgttgtttaggtcttgcaattagttcttagttctatttttt...

Basic information

species Vitis vinifera
transcript Vv04s0023g00380.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375514|gb|EC940507.1|EC940507
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|71859056|gb|DT008111.1|DT008111
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|30303671|gb|CB980465.1|CB980465
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|71867156|gb|DT016211.1|DT016211
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|110393823|gb|EC959339.1|EC959339
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|30303609|gb|CB980403.1|CB980403
EST:     TTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: TTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|161715778|gb|FC066182.1|FC066182
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|110369298|gb|EC933452.1|EC933452
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|294966027|gb|GW837394.1|GW837394
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTATCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|77584187|gb|DV221146.1|DV221146
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|110685575|gb|EE062425.1|EE062425
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|110418308|gb|EC984450.1|EC984450
EST:     TTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: TTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
EST: gi|110418385|gb|EC984534.1|EC984534
EST:     GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAG                         ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT
genomic: GAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcac ... gtgttattagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGACCCTGATTCTATTAGTCTTGATCTCAGTTTGGATTCCGGTCTTGGAGTTTTTGATGCTTTCTTTGCAAGTTTGTCAATGATAATTGTTAGTGAGgttcgttcactcgattcttagtgctattcttcttattaatgtttttatgtagcaataattgttgtttaggtcttgcaattagttcttagttctatttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa