Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTCCTAAGAGAGGTGGCTTCGGGAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaaggtcattatcttcaatatttttcttcttggtgctcaaaattgtaattttatttatttctttgttttgattgatatgaattataatgttaat...

Basic information

species Vitis vinifera
transcript Vv04s0023g00140.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861191|gb|DT010246.1|DT010246
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|110356881|gb|EC920025.1|EC920025
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|110724761|gb|EE100872.1|EE100872
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|110712695|gb|EE087976.1|EE087976
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|71865271|gb|DT014326.1|DT014326
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|161708928|gb|FC060471.1|FC060471
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTA
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTA
EST: gi|161715809|gb|FC065164.1|FC065164
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|30135371|gb|CB920709.1|CB920709
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|294966861|gb|GW839736.1|GW839736
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGACATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|30129653|gb|CB914992.1|CB914992
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
EST: gi|161719832|gb|FC065768.1|FC065768
EST:     GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAG                         GTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT
genomic: GAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaag ... tttctcttagGTTGCGGACTATGACAAAGTAGGGTCTGTTTTGCGTATACGGGGAAAGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGTCCTAAGAGAGGTGGCTTCGGGAGGAAGGGATGCAGAACGTGTGAAGCTAAAGCTGGAAATAAAAGTTGAGgtatgacaaggtcattatcttcaatatttttcttcttggtgctcaaaattgtaattttatttatttctttgttttgattgatatgaattataatgttaat

- - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA