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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGGGTTTAATGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcggatttcctttttcaatcatgtaaagtgtattttgttgtattgcgtgtgtttttgcgtatgcagtgaattcatcttgtttattgcacaattg...

Basic information

species Vitis vinifera
transcript Vv04s0008g07360.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g07360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 3
CAATTGGGTTTAATGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcggatttcc-tttttcaatcatgtaaagtgtattttgttgtattgcgtgtgtttttgcgtatgcagtgaattcatcttgtttattgcac-aattg
| |||||||| || ||||| || || ||||| |||||||||||||| |||||||||||||| ||| | |  |        | | | | ||| |   | ||  ||   || |   ||| |    |||     | || |  |   |   | |  ||    | |||| 
CGATTGGGTTCAACGTGGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTCTGGGATCTCGgtgagtgtgcccccaagtctctgattcacgaggactggtttagatttttccgcgagacaatttataagtacaatttacg-acaatatccatgaggccaatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137308|gb|CB922646.1|CB922646
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG
EST: gi|33406636|gb|CF212263.1|CF212263
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG
EST: gi|30126854|gb|CB912193.1|CB912193
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG
EST: gi|33408309|gb|CF213936.1|CF213936
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG
EST: gi|33408221|gb|CF213848.1|CF213848
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG
EST: gi|110406223|gb|EC971789.1|EC971789
EST:     TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGG                         GTGGACAGACAAGTATCAG
genomic: TGTGGAAACAGTTCAGTATAACAACATCAAGTTTCAAGTCTGGGATCTGGgtaatttcgg ... gttgaaacagGTGGACAGACAAGTATCAG