1 5' 3' | 2 5' 3' | 3 5' 3' |
ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgctgttgtttttattatttggacaggtagatccttgaattggttcaaaaatcccaccattttcatgtgtttttgtctattcccttgaaagtaa...
species | Vitis vinifera |
transcript | Vv04s0008g07000.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATG GAGTTGATGCCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGGEST: gi|110718718|gb|EE095871.1|EE095871
genomic: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgct ... tttgtcccagGAGTTGATGTCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGG
EST: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATG GAGTTGATGCCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGGEST: gi|110702309|gb|EE080873.1|EE080873
genomic: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgct ... tttgtcccagGAGTTGATGTCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGG
EST: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATG GAGTTGATGCCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGG
genomic: CTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgct ... tttgtcccagGAGTTGATGTCCATTTATCTTCCCTGAAGCAATATAACCCAACAATTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgctgttgtttttattatttggacaggtagatccttgaattggttcaaaaatcccaccattttcatgtgtttttgtctattcccttgaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagta