Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgtgggctaattttttctatatgttccctgctatttatgataagttttttcatgttcttacagtgattcaaaacctgttaattgtgaattt...

Basic information

species Vitis vinifera
transcript Vv04s0008g05690.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 3
TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgtgggctaattttttctatatgttccctgctatttatgataagttttttcatgttcttacagtgattcaaaacctg--ttaattgtgaattt
|||| | || ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||  ||||||| |||   | |||| |   || | || | ||||  ||  | | ||  |  | ||  || ||     |  | |  | |     ||      ||| |   | |
TATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGgtaagtccttatgggattgcttgt-ctctgtgttatcttgtctatacaacta-ttacttgatagatgtcaaatattcctctctcttgccccattttttctat

upper sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G07050.1 (Glycine max), 5'ss of exon 3
TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgtgggctaattttttctatatgttccctgctatttatgataagttttttcatgttcttacagtgattcaaaacctgt--taattgtgaattt
|||| ||||  | |||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||| || ||||| || ||||||||  ||||||| |||   | |||| |   || | || | ||||  ||  ||  ||  |  | ||  || ||        | |  |      | ||    | || |  ||||
TATGTTGGAATCGGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATACTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGgtaagtccttatgggattgcttgt-ctctgtgttatcttgtacgtacaacta-ttacttgatagatgccaaatattctctctcttgccccattttttgattt

upper sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 3
TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgt-----------------gggctaat-----tttttc-------tatatgttccctgctatttatgataagttttttcatgttcttacagtgattcaaaacctgtta----attgtgaattt--------------------------------------
 ||| ||||||| ||||| || |||||||| |||||||||||||| ||||| |||||||| |||||||| ||||| ||||| || ||||||||||||||||||||| |||                     | ||||      | |||       ||||| ||  ||||   |  ||     |||  |    ||||| ||    ||  |||||| |||    ||||  |  ||                                      
CATGTTGGAGGCTGATGCTGGGTTTCTTGTGCGTGACACAGTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagtttatactttatttattcaataacaagataataaaaactcttcaattgtgtatatattttctgca--tcgtggagtttttcctttctttcttgca-cacttggaaaccttttatgttattgaaatcttacattatggattctacgtttcttctattcgtctgccag

upper sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 2
TATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGgttagtatatgtgggctaattttttctatatgttccctgctat-ttatgataagttttttcatgttcttacagtgattcaaaacctgttaattgtgaattt
|||| | ||||| ||||| || |||||||| ||||||||  |||| ||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||||  ||      || || |||||  |   |      ||| |||  | |  ||   | |||    ||  ||  ||       | ||  | |       
TATGTTAGAGGCTGATGCTGGGTTTCTTGTGCGTGACACTCTTGTGTTTGTGTGTGAAATATTGGATTGTTGTCCTTGGTTTGAGTTTTCAGACCTAGAGgttagttcatact--ttatttctttcttaaacattgtaattatgttactaaacattacattatggaactattgt--tttggcctttatttttag-------