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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCTGCTAGTACCAATGGTTCTCTTGCCTCTATTTCACGCCCAAAACAAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGgtaaaagttgatgaacaactttgctttctacttttgagcatggttatatgttgacccccaggtataactgcattccatttgttttttttttataatcatattactactattgattattgttttctctattttcttcttatag

Basic information

species Vitis vinifera
transcript Vv04s0008g05480.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711956|gb|EE089029.1|EE089029
EST:     AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAG                         CAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
genomic: AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGgtaaaagttg ... cttcttatagCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
EST: gi|37188322|gb|CF607671.1|CF607671
EST:     AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAG                         CAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
genomic: AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGgtaaaagttg ... cttcttatagCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
EST: gi|110713754|gb|EE089952.1|EE089952
EST:     AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAG                         CAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
genomic: AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGgtaaaagttg ... cttcttatagCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
EST: gi|294964234|gb|GW838037.1|GW838037
EST:     AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAG                         CAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT
genomic: AAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGgtaaaagttg ... cttcttatagCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCT