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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGAGTGTGAAGGCAATCCGCAGGAAGACCACTGGAACAGGGCGAATGAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatttcccctttggattcacaattttctcaatgatttttgttctgttaggggtcatattttgttttggttatttgactacacattgttttggttttgggtag

Basic information

species Vitis vinifera
transcript Vv04s0008g03900.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g56990.1 (Oryza sativa), 5'ss of exon 3
AATTGGAGTGTGAAGGCAATCCGCAGGAAGACCACTGGAACAGGGCGAATGAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatttcccctttggattcacaattttctcaatgatttttgttctgttaggggtcatattttgttttggttatttgac--tacacattgttttggttttgggtag--
|| |||||||||||||| ||| | ||||||||||||||||| ||| | |||||||| || || || || ||    ||||| ||||||||||||||||| ||||  |   |  | |||     |  | || ||||  || | || |   |||       | || |  |  |     | ||| ||  |  |  |  || | |  ||    |   
AACTGGAGTGTGAAGGCCATCAGGAGGAAGACCACTGGAACTGGGAGGATGAGGTACCTTCGCCACGTGCCCAAGAGGTTCAAGAGTAACTTCAGAGAGGgtatgcttatatctcttc----ttgctatgttct--atcacttgttcactg------attatttactactccatctttttcacaatgtaagtcattctagcatttctcacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544385|gb|CF512617.1|CF512617
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GGACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110716567|gb|EE091662.1|EE091662
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110426007|gb|EC992404.1|EC992404
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110428159|gb|EC994622.1|EC994622
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGC
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGC
EST: gi|110692276|gb|EE071338.1|EE071338
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110705824|gb|EE083118.1|EE083118
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|34321111|gb|CF373865.1|CF373865
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110393500|gb|EC958783.1|EC958783
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110693836|gb|EE070416.1|EE070416
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110392473|gb|EC957921.1|EC957921
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110707741|gb|EE084486.1|EE084486
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71870115|gb|DT019170.1|DT019170
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71868943|gb|DT017998.1|DT017998
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110388252|gb|EC952984.1|EC952984
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110409567|gb|EC975233.1|EC975233
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|30301004|gb|CB977798.1|CB977798
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCGGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110717458|gb|EE093330.1|EE093330
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71869027|gb|DT018082.1|DT018082
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|71868495|gb|DT017550.1|DT017550
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110424590|gb|EC990957.1|EC990957
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110707148|gb|EE083294.1|EE083294
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110695260|gb|EE073077.1|EE073077
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|34415393|gb|CF414147.1|CF414147
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110386000|gb|EC950569.1|EC950569
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110409906|gb|EC975580.1|EC975580
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
EST: gi|110401323|gb|EC967930.1|EC967930
EST:     GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAG                         GTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA
genomic: GAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGgtaaacaatt ... ttttgggtagGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGAGATTCAA