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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAGATACTGATGTAGTGAAAGCATTGATTGAATATGTTTCTCATTCAGCAATTGAGGTTTTGGTTGTTGGTGCCCCTGCAAAAGGTGGCTTTCTCAGgtgtgtgtgtccttcagtcacctgtatttgccttaaaatgatttccaaatgtgttatcacattgcattagtcttgaaatttcttaacctcagaaaccttcatctacagaag

Basic information

species Vitis vinifera
transcript Vv04s0008g02910.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G31230.1 (Arabidopsis thaliana), 5'ss of exon 3
TAGAAGATACTGATGTAGTGAAAGCATTGATTGAATATGTTTCTCATTCAGCAATTGAGGTTTTGGTTGTTGGTGCCCCTGCAAAAGGTGGCTTTCTCAGgtgtgtgtgtccttcagtcacctgtatttgccttaaaatgatttccaaatgtgttatcacattgcattagtcttgaaatttcttaacctcagaaacc-ttcatctacagaag
| || ||  | ||||| | || ||| ||  | ||||| |    |||       |||||||| ||||| |||||| || |  | ||||||||||||||||||||||| | |   ||  || | |      |  ||    ||| |     |      |  |  ||| || ||   | ||| ||       | | | |    ||  || |||   
TGGAGGAGTCAGATGTGGCGAGAGCTTTAGTCGAATACGCAAATCAGGTCATGATTGAGGTATTGGTGGTTGGTTCCTCCTCGAAAGGTGGCTTTCTCAGgtgtgtttttttatctttctctttc--cggttttgctgtgagtcttttagccagaa--aagttggatcagctgtcaaaattgaaggtgttatatatgactctgctgcag---