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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATACCGGGATTTTAAGGCTTCCAACATTTTATTAGACCCTgtaagctcttccccgcctgctctctccattgtcaatctcttcaaaatggctcaaagcttactcttctttcttctttccag

Basic information

species Vitis vinifera
transcript Vv04s0008g02070.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G33470.1 (Glycine max), 5'ss of exon 3
GATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATACCGGGATTTTAAGGCTTCCAACATTTTATTAGACCCTgtaagctcttc-----------------------------cccgcctgctctctccattgtcaatctcttcaaaatggctcaaagcttactcttctttcttctttccag------
 ||    || ||||||||||| || || |||||||| ||||||| ||| ||||| ||||||||||| ||||| || ||||| ||||||||| ||||| | ||| |||||                               |  || |  |||  | | || | || ||   ||| |  ||   | | | |  || ||   |||||  |       
AATTGCATTAGGAGCAGCCAAAGGTCTTGCCTTCCTTCATGAAGCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCGAACATTTTACTAGACTCGgtatgctctctgatcttttctgaagaatcatgttacatctcttgcatcatcttcctagtgaccatatcaagaaattaacttggacccttcaatttttatctctttgaaaatctag