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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa...

Basic information

species Vitis vinifera
transcript Vv04s0008g01750.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatac--agtattttcaaatcggtttgaatcattaatggacctatgaa
| ||||| || || ||||| || |||||  | |||||||| |||||||| ||||| ||||| || || |||||||||||||| ||||| || ||  | |||| |  ||  |  |   ||  |      ||    | |    ||  ||| |      | |  |||  ||  | |   ||    |  || |  | |     |  
TTGAGCTCTACGCAGAGAAGGTGAACAACCGTGGCCTCTGCGCCATTGCCCAGGCCGAGTCGCTACGCTACAAGCTTCTTGGTGGACTAGCCGTGAGAAGgttacgcacttattccctacattgcac-aacactgctatgttaatatgatgtgcatttcttagttgttgtagacttgtagtcactatcacagcaggctcgg-

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctacca--tgctactagatacagtattttcaaatcggtttgaatcattaatgga-cctatgaa----------------------------------
| ||| | ||||| ||||| || ||||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||||       |||    ||   ||   |||     ||   |  | ||  |||   | |||       |  |    |   || | |  |||   ||  | |||                                    
TTGAGTTGTATGCCGAGAAGGTGAACAACAGGGGTCTGTGCGCCATTGCTCAGGCTGAGTCGCTGCGGTACAAGCTTCTTGGAGGTCTTGCTGTGCGCAGgtgcgatgggttgccatt-cgtgtaattatgcccgtgtattcatcagttgcactttgatttgaatctagcttcccatgttaagtacttatcagaatcgatggtgtatgacgttttcttttttgtatgacgggtacag

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgta---------aatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtatt--------ttcaaatcggtttgaatca-ttaatggacctatgaa---------------
||||| | || |||||||| |||||||| || || || || || ||||| ||||| ||||| || ||||||||||||||||| || ||||| ||||| ||||            |  | |   | |  |   |||  |   | || | | ||   |  | |   ||  | |||         |  |  ||  ||||  |||  | | | || |   |                
TGGAGTTGTACGCTGAGAAGGTTAACAACAGAGGTCTATGCGCTATTGCGCAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttag

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttg---ttatctgatgtta--atttggttgctctaccatgctactagatacagtattttcaaatcggtttg------aatcattaatg--gacctatgaa---------------------------------------
||||| | || |||||||| || ||||| ||||| || ||||||||||| ||||| || ||  ||||||||||||| || ||||| ||||| ||||| ||||        || |||   || | |  | |||  ||| || |  || |   |  | || ||  |   |   |   |  |||         |||  | ||||  | | || |                                         
TGGAGTTGTACGCTGAGAAGGTGAACAACAGGGGTCTGTGTGCCATTGCCCAGGCCGAATCCTTGCGATACAAGCTCCTCGGAGGTCTTGCGGTTCGCAGgtttgcttttttattggatttgttttgttttaggattaggatattc-attttatttcttgactccagaccctttcactggtgaagtggaaaatgctcaatgctggcttagggttttttttgctgatacgtattaaaaattgtggatttacag

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgt---aaatcaagttcttgttatctgatgttaatt----tggttgctctaccatgctac-tagatacagtattttcaaatcggtttga--atcattaatggacctatgaa-------------------------------------------
| ||| | || || || || |||||||| |||||||| || |||||||||||||| |||||  |||| ||||||||||||||||| ||||| || || ||||   |   || |       | ||   |  |||||    | |  |     |  ||| |  |  |  |  | ||| |   |  ||   |  || |||   |      |  |                                           
TTGAGTTGTACGCGGAAAAGGTTAACAACAGGGGCCTGTGCGCCATTGCTCAGGCCGAGTCTTTGCGGTACAAGCTTCTTGGAGGGCTTGCCGTGCGCAGgttcgatgccaggacacctctttcatcttctaattcccgtagcggtggcgctgtgcaatgttcacgcgatttttacttttttgtccaataattattttcgatttcctctagtatgtttggttaatgaaattctgttttgggtggtggttacag

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa
||||||| ||||| ||||| || |||||  | |||||||| ||||| ||||| || |||||  ||||||||||||| || |||||||| || || || ||||   |  | || |  || | |    ||    | | |||||                                                           
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgt---ttgatttttctttcttt---tttggccttggtgctcag---------------------------------------------------------

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa
||||||| ||||| ||||| || |||||  | |||||||| ||||| ||||| || |||||  ||||||||||||| || |||||||| || || || ||||        |  || || | ||   ||  |        |   | |       ||                                             
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggccttggtgctaagagttctctacttcgtcag---------------------------------------------

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa
||||||| ||||| ||||| || |||||  | |||||||| ||||| ||||| || |||||  ||||||||||||| || |||||||| || || || ||||        |  || || | ||   ||  |        |   | |   |   ||                                             
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggccttggtgctaagagttctctactttgtcag---------------------------------------------

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 5'ss of exon 3
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa
||||||| ||||| ||||| || |||||  | |||||||| ||||| ||||| || |||||  ||||||||||||| || |||||||| || || || ||||        |  || || | ||   ||  |       ||   | |       ||                                             
TGGAGCTGTATGCCGAGAAGGTGAACAACCGTGGCCTCTGCGCCATCGCTCAAGCCGAGTCTTTGCGATACAAGCTCCTGGGAGGACTGGCCGTCCGAAGgtttgatttttctttcttttttggccttggtgctaagacttctctacttcgtcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71866153|gb|DT015208.1|DT015208
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|30295730|gb|CB972524.1|CB972524
EST:     CAGGCAGAGTCACTGCGATGCAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|32247633|gb|CD713452.1|CD713452
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|32270022|gb|CD719181.1|CD719181
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|33401617|gb|CF207244.1|CF207244
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110728527|gb|EE104173.1|EE104173
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|352773252|gb|FQ470839.1|FQ470839
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110690223|gb|EE067133.1|EE067133
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110732469|gb|EE107785.1|EE107785
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|32269891|gb|CD719050.1|CD719050
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110688348|gb|EE066796.1|EE066796
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|77578758|gb|DV218182.1|DV218182
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|27582088|gb|CB004783.1|CB004783
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110709636|gb|EE085271.1|EE085271
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|32272105|gb|CD721264.1|CD721264
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|30253062|gb|CB970613.1|CB970613
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|352782408|gb|FQ470311.1|FQ470311
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|32245818|gb|CD711637.1|CD711637
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|30326710|gb|CD009972.1|CD009972
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|161706215|gb|FC054973.1|FC054973
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
EST: gi|110708853|gb|EE086870.1|EE086870
EST:     CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCCGTTCGGAG                         GGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG
genomic: CAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaag ... ctgattttagGGCTTGCTATGGTGTTCTGAGGTTTGTTATGGAAAGTGGGGCGAAAGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGCTTTATGCTGAGAAAGTTAACAATAGGGGCCTCTGTGCCATTGCTCAGGCAGAGTCACTGCGATACAAGCTTCTTGGAGGACTTGCTGTTCGGAGgtaaatcaagttcttgttatctgatgttaatttggttgctctaccatgctactagatacagtattttcaaatcggtttgaatcattaatggacctatgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctacc