Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgtttgaaaaagttgtaaagatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g35290.1 (Oryza sativa), 5'ss of exon 3
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtg--------tttgaaaaagttgtaaagatca-----catgttaaattaaaagaagg-gaaaacatgctag--aggtcttaaatggcctatgatatttgctaagcatataa-----------------------------------------------------------------------------------
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CAGCACAGCAAATTTTAGAAGAGAGGAAGCTCAATCAGACATTACTAGCCAATCACAGCACACTGCTTGATCTGCTTGAAATCCCACAACTGATGGACACgtatgtgccatttttttttataatttcttaaagaccttcagtcatcttgtgttgtttgatgttgttgatatgctgtttagttctcgattcttctctaatttctgtatgctacagatccattttgttcagtaaaacatggtttgatttgtacaattgacgaatcatgaagaattacatttaacaatctacatgctcacag
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G006781_T03 (Zea mays), 5'ss of exon 3
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatg-------tgtttgaaaaagt-----tgtaaagatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa--------------------------------------------------
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CCGCACAACAAATTTTGGAGGAGAGGAAGCTTAATCAAACATTACTAGCCAACCACACTACATTGCTTGACTTGCTTGAAATTCCACAATTGATGGACACgtatgcaacttttatcttaccatcccctcgtctcgttactttatgtttgagtcatttgttattgacaatgccatttgtttttcataatgcataattttaactgt-tgtataattgtattgtcgctgaattatgcatgacaatcagtaaacttatgcttgtag
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC235544.1_FGT004 (Zea mays), 5'ss of exon 3
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatg-------tgtttgaaaaagttgtaaagatcacatgttaaattaaaagaag-----ggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa------------------------------------------
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CTGCACAACAAATTCTGGAGGAGAGGAAGCTTAACCAAACATTACTAGCCAACCACACTACATTGCTTGACTTGCTTGAAATCCCACCATTGATGGACACgtatggaacttttatcttaccattcccttgtctctttactttatgtttgagtcggctgttaatgacaatgtcatttgtttttcataatgcatagtttcagctgt-tgtattattgctgaattatgcatgacaatcattaggcttatgcttgtag
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 2
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgtttgaaaaagttgtaaagatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa------------------------------
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CTGCTGAGCAGATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTAACTAATCACAGTACTTTGCTTGACTTGCTAGAAATTCCTCAACTCATGGACACgtatgt---taaaaaagat----agaccatttaattacactcctggaatttccacatactaatgttctcacata--ttatgacaatcacttcctctgtgagaagccttgtaaattcctatatttttgcag
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G04920.1 (Glycine max), 5'ss of exon 2
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgtttgaaaaagttgtaaagatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa------------------------------
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CTGCTGAGCGGATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTAACTAATCACAGTACTTTGCTTGACTTGCTAGAAATTCCTCAACTCATGGACACgtatgt---taaaaaa----tatagactatttaattacactcctggaatgtccatgtactaatgttattgcata--ttatgatgatcacttcctctgtgagaagcgttgtaaattcctatatttttgcag
upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgtttgaaaaagttgtaaa-------gatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa----------------------
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CTGCTGAGAATATTTTGGAGAAGAGGAAGATGAACCAAGCATTGCTGGCAAATCACAGCACTCTTCTTGACTTGCTTGAGATTCCTCAGCTTATGGACACgtaagctattagacctcgtgccaacttttttgatctgctttctagtcaatctttagcggatcttcttcctggcgttagcaacttctggatgtgtacttatcttttcaaaatgatttgtgtctttgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389066|gb|EC953878.1|EC953878EST: AATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACAC ATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGT
genomic: AATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgttt ... tttcatgcagATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACgtatgtgtttgaaaaagttgtaaagatcacatgttaaattaaaagaagggaaaacatgctagaggtcttaaatggcctatgatatttgctaagcatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca