1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgttctcaatccaattatctctcccttattcaataagctttacatatgatgcttcctttggtatgttttcaaagagcagtttccaagcactat...
species | Vitis vinifera |
transcript | Vv04s0008g01040.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCATTCCAAGAGCCCTCATGCCTCTTGAG ATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAGEST: gi|110424568|gb|EC990932.1|EC990932
genomic: TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgt ... atggtgacagATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAG
EST: TGTCATTCCAAGAGCCCTCATGCCTCTTGAG ATATCTGGCCATACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAGEST: gi|30253208|gb|CB970759.1|CB970759
genomic: TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgt ... atggtgacagATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAG
EST: TGTCATTCCAAGAGCCCTCATGCCTCTTGAG ATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAGEST: gi|110396809|gb|EC962509.1|EC962509
genomic: TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgt ... atggtgacagATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAG
EST: TGTCATTCCAAGAGCCCTCATGCCTCTTGAG ATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAG
genomic: TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgt ... atggtgacagATATCTGGCCAAACTGTTGGAGAAGTAAGAATTGTGTCGGACATGCATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCATTCCAAGAGCCCTCATGCCTCTTGAGgtaaccatgttctcaatccaattatctctcccttattcaataagctttacatatgatgcttcctttggtatgttttcaaagagcagtttccaagcactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagca