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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgtcctttaagaatttcgtttctgggttgctgatgattaccatatccttttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag

Basic information

species Vitis vinifera
transcript Vv04s0008g00840.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 3
CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgtcctttaagaatttcgtttctgggttgctgatgattaccatatcct-tttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag
     ||    | ||| |||    ||||  |  ||||||||    |||||||||||||| || | ||| ||||| |||||||| ||||||||||||||||| |  | ||  |   |   | ||  ||     |    ||   | |  | |||| ||  | ||||||        | | |                                         
---AATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAGAGgtatattgtacaagactaactgcttagtgaagtacctgtaatttctgttgtttaactaatttgtcttgtcatgcgattag-----------------------------------------

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 3
CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgtcctttaagaatttcgtttctgggttgctgatga--ttaccatatccttttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag
     ||    | ||| ||||   ||||  || ||||||||    ||||||||||||||||| | ||| ||||| |||||||| |||||||| |||||||| |  | |   ||      ||  | | |  |  |    |||  |  | |||  |  ||| |    |    |  ||| || |                                        
---CATGCCTCTAGAAAAGATGCTGAGAAAGCTGATTATTCTATCAGCAGGCATCCTGAGTTTCGCTACAAAACTGAGTTTCAAAGCCATGAGCCAGAGgtatattctcgcaagcattgtttagtggtattatttgtcttatgaattacttgaaatttgacaaagtgatgttattattgaatag-------------------------------------

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 3
CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgt-cctttaagaatttcgtttctgggttgctgatgattaccatatc-cttttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag
|||| | | |   ||| ||||   ||||  || ||| ||||    |||||||||||||| || | ||| ||||| |||||||| ||||| ||||||||||| |    | |  ||  | |||    |||      ||  | |   ||  |||  |  |||      |    |  ||| |||| || |                                   
CATGCTTGTA---GAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatattctcacaaacattgttaagtggtattatttgtcttctgaattacttgaaatttgataaagtgatgttgtta-tggaatcag-----------------------------------

upper sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 3
CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgtcctttaagaatttcgtttctgggttgctgatgattaccatatccttttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag
     ||    |||| ||||  | |||| |   || |||         ||||||||||||||||  || || ||||| |||||||| |||||||| |||||      |  |  ||   ||   |     | |||  | || ||     ||  || ||  ||||      | |     ||||  || | | |   |   || ||   ||           
---AATGCTTGTCGAGGAGAACTTGAGAGGCAAGAATATCTTGTTTCTAGGCATCCTGAGTTCCGTTACAAGACCGAATTTCAGAGTCATGAACCTGAGgtacg---tgggtcttaaattggcgatagaccgatagtaacaat-----ttgttcatgagtgtcaattgacttcttgtgactgaggcactgag--ccatatctagcttgg----------