1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGATGGAAAGAAGTGGGGTGTCAATGTTCAACCATTGTCTGGTTCTCCAGCTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgttttttgcttaatattgcctttgatcattggaattgttttggattgtattgatccgcactaatcacacttgtaaaccatacttag
species | Vitis vinifera |
transcript | Vv04s0008g00770.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTAACTTTGAAGTTTACACTGCCCTTCTTAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTEST: gi|110403131|gb|EC964343.1|EC964343
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: CAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTEST: gi|161715305|gb|FC068028.1|FC068028
genomic: CAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCAEST: gi|32269544|gb|CD718703.1|CD718703
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCA
EST: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATEST: gi|110378905|gb|EC944062.1|EC944062
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCAT
EST: CTAACTTTGAAGTTTACACTGCCCTTCTTAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTEST: gi|71862785|gb|DT011840.1|DT011840
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
EST: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATG GGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
genomic: CTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgtt ... ccatacttagGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGGAAAGAAGTGGGGTGTCAATGTTCAACCATTGTCTGGTTCTCCAGCTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGgtaagttgttttttgcttaatattgcctttgatcattggaattgttttggattgtattgatccgcactaatcacacttgtaaaccatacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG