Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGgtatgttctgcttatgatttgcctagaggattcttgttgttttctatgtatacagttattaggctttttgactcagtgttaaagcattcaactttaaggactaatgtgtttacttgcttttgcctcag

Basic information

species Vitis vinifera
transcript Vv03s0097g00670.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 4
GTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGgtatgttctgcttatgatttgcctagaggattcttgttgttttctatgtatacagttattaggctttttgactcagtgttaaagcattcaactttaaggactaatgtgtttacttgcttt-----tgcctcag
||||| ||| ||||||| ||  |  ||||| | ||||  ||| | | ||||||||| ||||||||||| |||||| |||| ||||||| |||||||     |  |||   |  | |   || |      ||     ||     ||| |      | |  ||| |   || |    ||   | ||  |   || | || ||   || |||     ||| ||||
GTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACAATAAATCAGCTTCGTGAAAACTTTGTCTCCATTGAGAAgtatgttagaaatgagatggactgaaactgttatcacctattagagggtg-gttgttttctcttgtgtaaacttaccattgatattttttccctttggacttactttgattttctgatttcttgatgcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717701|gb|FC068541.1|FC068541
EST:     TCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAG                         GCTATGTCAAGAGTGCCAAAACTTAATTGAAAATCATGACCAAATAAAGCT
genomic: TCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGgtatgttctg ... tttgcctcagGCTATGTCAAGAGTGCCAAAACTTAATTGAAAATCATGACCAAATAAAGCT