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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacag

Basic information

species Vitis vinifera
transcript Vv03s0097g00590.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G043983_T04 (Zea mays), 5'ss of exon 2
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacag
||| || |||||  ||   ||| ||||  | ||    ||||||||||||||| | ||||||||||||||||| ||||| || || ||| |||| ||||||||  |  |   | |      ||  | || ||| |  |  | || || |    |  |    ||||  | || ||   || |||   ||   | |  | |                       
CGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttccatgtcacccgttgttattgtggcatcttccataatgatt---tatttcttaactcatctgcttctgtgcatg---aaactatgtgtag-----------------------

upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G174696_T01 (Zea mays), 5'ss of exon 3
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacag
| | || |||||  ||   ||| ||||  | ||  | ||||||||||||||| | |||||||| |||||||| |||||||| || ||| |||| ||||||||  |  |   |      | ||  | || |||  ||| |   ||   | ||||  |    |||| ||||| ||   || |||   | || | | |                          
CATTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGCATCTGAAACTATTAAAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttccatgccatcaattgttattgtgg--aatcttccat-aatggtgtatttcttaactcgtttgcttctttgcatga-aactgcatgtag-------------------------

upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G05280.1 (Glycine max), 5'ss of exon 3
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggta-gtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcat-ttttggttgcttaacag
   ||| ||||| || |||||  |||||||||| ||| | || |||||||| || ||||||||||| |||||||||||| | | ||| || || |  |   ||||  ||| ||    || ||  |||      ||||  | | |  ||  ||||| ||||    |  ||| |||  ||  || |  |  |   |  ||  |  ||  |   | ||||   |||
---GTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATC--ACCCTAGGg-taactt---ggacttcattt------aaatgccctttcagtttgtgtg-tgtgtgttttttttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409330|gb|CX017582.1|CX017582
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|110687534|gb|EE065054.1|EE065054
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|110730004|gb|EE106584.1|EE106584
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|352765106|gb|FQ465803.1|FQ465803
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|110698670|gb|EE076432.1|EE076432
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|110686396|gb|EE063988.1|EE063988
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
EST: gi|351046106|gb|FQ442484.1|FQ442484
EST:     AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG                         TTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG
genomic: AAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaa ... tgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTG