1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCAGTATAATTGGTGGACTTCCCCTTATCTTGACCGTGATGCCGAGGCAGTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcag
species | Vitis vinifera |
transcript | Vv03s0091g00100.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGAGAGGATAACATTTTTGA-GCTTGAAGTGGCTGAGTTGAAATTTAT GTTCTGTGAGAGATCGCAAGCCCTAGTAEST: gi|352795531|gb|FQ480119.1|FQ480119
genomic: TTCGAGAGGATAACATTTT-GAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTA
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT GTTCTGTGAGAGATCGCAAGCCCTAGTACATGEST: gi|351015716|gb|FQ431671.1|FQ431671
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATG
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCEST: gi|352798346|gb|FQ480371.1|FQ480371
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAATT-TAT GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCEST: gi|351052499|gb|FQ456347.1|FQ456347
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATTTAT GTTCTGTGAGAGATCGCAAEST: gi|351049584|gb|FQ429206.1|FQ429206
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAA
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTAT GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCEST: gi|351026100|gb|FQ428112.1|FQ428112
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
EST: GTTCGAGAGGATAACATTTTGAAGCTTGAATTTGCTGAGTTGAAATTTAT GTTCTGTGAGAGATCGCAAGCCCTAATACATGGAGEST: gi|351016539|gb|FQ423966.1|FQ423966
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAG
EST: GTTCAAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTAT GTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
genomic: GTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttc ... tattttgcagGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGTATAATTGGTGGACTTCCCCTTATCTTGACCGTGATGCCGAGGCAGTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATgtactgtttccatatcagtgcctcatttcttgcagtaatataaaatgtttctattaatagcagtttaattctgaaataaacaggttgaaatcctttctaagcctagttagaatctattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG