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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCAGGTTGGAAAATGGATTGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcataaactcatagtagaaactcagtaccctactgtgaagtttgttaattgaaagcctcaatgtcttcattctgtttaatgatattaagaaagat...

Basic information

species Vitis vinifera
transcript Vv03s0063g01870.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251788|gb|CB969521.1|CB969521
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|30251745|gb|CB969478.1|CB969478
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|351040914|gb|FQ443690.1|FQ443690
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|34550554|gb|CF518772.1|CF518772
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|110691456|gb|EE069582.1|EE069582
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|34549572|gb|CF517804.1|CF517804
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|77585907|gb|DV222055.1|DV222055
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|30131445|gb|CB916784.1|CB916784
EST:     TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCGGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|34547558|gb|CF515790.1|CF515790
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA
EST: gi|77581551|gb|DV219724.1|DV219724
EST:     TGCTTTTATTGCCGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAG                         ATTGGCTGGAAATGCCTGCAGCTTTGATTCTTCTTATAGTGGTGGCTCCCA
genomic: TGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcata ... gtgattgcagATTGGCTGGAAATGCCTGCAGCTTTGATTCTTGTTATAGTGGTGGCTCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCAGGTTGGAAAATGGATTGCTTTTATTGCTGTAGTGCTGCGCCTCTTCTTCCCAAAACGTTTCCCAGgtatatcataaactcatagtagaaactcagtaccctactgtgaagtttgttaattgaaagcctcaatgtcttcattctgtttaatgatattaagaaagat

- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa