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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag

Basic information

species Vitis vinifera
transcript Vv03s0063g00140.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g06980.3 (Oryza sativa), 5'ss of exon 2
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgtta--tggctgaaaaaaattggt-tcttgattgttgcag
||| || |||||||||   |||||||| ||||||||||| ||||||||||| |||||||| || || ||||| ||||| ||  ||||||| ||||| | |||| | ||   |  |     |  ||       ||||  ||  |    || |||     |   |  |||     ||   | |  | | |  |||||
GCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGgtcagcaacacgcaa--atcccccatctcttccatcgcagatctggcaagaaatccccaatcgattgacgtccatccctctgctaactaatgcag

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G099363_T03 (Zea mays), 5'ss of exon 2
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag------------------------
|||  |||||||||||   |||||||| ||||||||||| ||||||||||| |||||||| || || ||||| || || || ||||| || ||||| | ||||||       ||     |   | |  |     |     | |  ||     |        |   ||  |  ||    | |   |||  |                          
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCGCTCCTCGCCACCGCGCTCGCACTCCCGGAGGACGGCACGgtcggtgccctttctctctttctctctctctctcttt---cccagatctgccacccacccagaccaaggatctttacccctctctgtctctctctctgttgctcgtccccccgcag

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G127948_T02 (Zea mays), 5'ss of exon 4
-------------------------------------------GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag
                                           |||  |||||||||||   |||||||| ||||||||||| ||||||||||| |||||||| || || ||||| || || || ||||| || ||||| | |||| |    || ||               |     |    ||| |     ||   |                                    
ACCTGATGACGACCTCCGCCGACGAGGGGCAGTTCCTGAACATGCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTActccctcctcgccacggcgctcgccctcccggaggacggcacggtccgtcgttgttccctcccttttctcagatctgccaccccacctccctgaaggcga-----------------------------------

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G127948_T04 (Zea mays), 5'ss of exon 5
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcat-----------agatc-aacacagtaatcatccaagcacgtataa---aaaaatgttatggctgaaaaa--aattggttcttgattgttgcag-----------------------
|||  |||||||||||   |||||||| ||||||||||| ||||||||||| |||||||| || || ||||| || || || ||||| || ||||| | |||| |    || ||             |||||   |||   |     |  |   || |  |   |    |  |    |||| |||  ||    ||||   |   |                           
GCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACGGCGCTCGCCCTCCCGGAGGACGGCACGgtccgtcgttgttccctcccttttctcagatctgccaccccacctccctgaaggcgaagcagctagcggtcctcccactgataaaccaaggatttctctctccctctctttgttgttcgtcccgccccgcag

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G11530.2 (Glycine max), 5'ss of exon 3
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGg--tcgggaaatggtcataga---tcaacacagtaa----tcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag--
||| || ||||||||||||||||||||||||||||| || || ||||||||||| || || ||||| ||||| || || ||||| || || || |||||||  |    |   |  | |||     | | | | |||    | ||         |||||||  |   | |  |||| ||  |||  ||||      ||  ||  
GCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGATATTCACTTCTTGCCACCGCTCTCGCTCTTCCTGAAGATGGAAAGgtattaaaagcagagcttagcacccccaaagaataaagctttatttttctctctataaaatcaaaatttt-ctgacaaccatt--ttctatgcaattatagtc

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G33780.1 (Glycine max), 5'ss of exon 3
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaa---tggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgtt-atggctgaaaaaaattggttcttgattgttgcag------------------------------------------------------------------------
||| || ||||||||||||||||||||||||||||| || || ||||||||||| || || ||||| ||||| || || ||||| || || || ||||||||  | |||   |  || | |   |||    |  | || |||  |     |||    | || ||   | ||  | ||    | |||         |                                                                        
GCTCCTTAAGCTCATCAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGGTATTCACTTCTTGCCACCGCTCTCGCTCTTCCTGAAGATGGAAAGgtatgaaaagcttcttcttggcaaaaccatttctttatgcaattatactcaaatgggtatttatttattaattacatccaattttgggaaagagtgtccaattatggcatgatgtgttaaacaacaaaaattgtctgaaatttaagttattgtttgtacctggtgcag

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G34050.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaacacagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag
|||| |||||||| | || ||||||||||| |||||||| || || |||||||||||||||||||| ||||| || ||||||||||| || ||||| || ||     |||  || |    |  | | ||     |    |   || |     ||  |      |||||         | || ||  |     
GCTTATCAAGCTCGTTAACGCCAAGAACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCCCTGAAGACGGCAAAgtaaatcaatc-tcttcatcctcctctgtt----ttttggtgggttttgtcgaacttgggaattgaaagtttcatcctttttatcatcag--

upper sequence: Vv03s0063g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ22516 (Selaginella moellendorffii), 5'ss of exon 3
GCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATAGGCGTCTACACTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaatggtcatagatcaaca-cagtaatcatccaagcacgtataaaaaaatgttatggctgaaaaaaattggttcttgattgttgcag
  | |||||| | || || |||||||| || |||||||| || ||||||||||| |||||||||||   ||| || || ||||| || || || |||| |||    |  |    |   || | || |  ||    | |   | || ||  | |                                        
CTTGCTCAAGATGATGAACGCCAAGAAGACAATGGAGATTGGAGTCTACACTGGTTACTCTCTTCTCAGCACGGCTCTGGCTCTGCCGGAAGATGGAACGgt-aaaatcttagaaagtataaccagccatacctgtgctgacgcggatgcacag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352795208|gb|FQ477318.1|FQ477318
EST:     CTGGCTACTCTCTTCGGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGATATCAACAAAGAAAA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAA
EST: gi|33409666|gb|CF215293.1|CF215293
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|110392855|gb|EC957377.1|EC957377
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|110392663|gb|EC956866.1|EC956866
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|77586769|gb|DV222527.1|DV222527
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|33407984|gb|CF213611.1|CF213611
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|34548696|gb|CF516928.1|CF516928
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|37185411|gb|CF604764.1|CF604764
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCT
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCT
EST: gi|110378003|gb|EC943111.1|EC943111
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|34550193|gb|CF518411.1|CF518411
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|110372307|gb|EC936462.1|EC936462
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|110378272|gb|EC943395.1|EC943395
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|110365089|gb|EC928834.1|EC928834
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|352794669|gb|FQ475167.1|FQ475167
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGTCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|34548780|gb|CF517012.1|CF517012
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|33407910|gb|CF213537.1|CF213537
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|33409385|gb|CF215012.1|CF215012
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
EST: gi|33409469|gb|CF215096.1|CF215096
EST:     CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAG                         ATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA
genomic: CTGGCTACTCTCTTCTGGCCACAGCCCTTGCTCTCCCCGATGACGGAAAGgtcgggaaat ... attgttgcagATCCTGGCTATGGACATCAACAAAGAAAATTACGAGCTGGGCCTGCCAGTA