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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggccacagactcatcaatcttaatacacaaaatatagatacacatatatctccatgttgctgaattcagtctaattatcgaaccactttgtaaacag

Basic information

species Vitis vinifera
transcript Vv03s0038g04760.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G12450.1 (Glycine max), 5'ss of exon 3
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagg---gccacagactca-tcaatcttaatacacaaaatatagatacacat-atatctccatgttgc-tgaattcagt--ctaattatcgaaccactttgtaaacag----------------------------------------------
| ||||||||||||| ||||| ||||||||  |  ||||||| || |||||||| |||||||| || || ||||| || ||||||||||| ||||| |||||    |   |  |   ||||  || | ||| || |  |     ||| || | || ||  ||||||      | |||| | |     | | | | |  |   | | |||                                                
TTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgttagagttagttagttactccctccaacttcattcctattcgttagttaaatattattgctccataccaaattaatttactagtctactgttggaatatgctttcaacttttgaagttcacgtgacttattttattgtatttattggcacatacag

upper sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G04670.4 (Glycine max), 5'ss of exon 3
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcca--cagactcatcaatcttaatac-acaaaatatagatacacatatatctccatgttgctgaattcagtctaat------tatcgaaccactttgtaaacag-------------------
| ||||||||||| | ||||| ||||||||  |  ||||||| || |||||||| |||||||| || || ||||| || ||||||||||| ||||| |||||  || |  |   | |  | ||||  | | | | |     ||   |   | ||||    |||  ||  |  ||| || ||| |      | ||    |||||  |  |  |                   
TTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGgt-tagagttagttacatgcttcaacttcattcctattcgttagttaattaaatattataccaaattcatttatttaggctattggaatgtgtcaggtcacttattttattgtatttatttctgcatacag

upper sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggccacagactcatcaatcttaatacac---aaaatatagatacacatatatc----tccatgttgctgaattcagtctaattatcgaaccactttgtaa-acag
  |||| ||  | ||||| || |||  |||  |||| || || || |  ||||||||||||||||||||||| || || || || ||||| ||||| ||||||||   |        |  |  |||  | |||    ||  |   ||||   || |       | ||| |      ||   ||  | ||    |     |||||    |||
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360400|gb|EC923471.1|EC923471
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|33408116|gb|CF213743.1|CF213743
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110357551|gb|EC921175.1|EC921175
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110416436|gb|EC982418.1|EC982418
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110358413|gb|EC922605.1|EC922605
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC