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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGCCCTTTTCATTGCTGAAGCCTTGGATTTTTGTAGTACTGAAAGCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGgtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttgattggactttgtag

Basic information

species Vitis vinifera
transcript Vv03s0038g03270.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G099598_T01 (Zea mays), 5'ss of exon 3
GAGAGTAGCCCTTTTCATTGCTGAAGCCTTGGATTTTTGTAGTACTGAAAGCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGgtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacata-atttgatgtttagctaggtgataatctaatattttgattggactttgtag
|||||| ||    | ||| ||||||||  |||| | ||| || |||||  |  |  | ||||||||||| || |||||||||||||| |||||||| |||||     ||  | | ||||  |    | |||    |  |    ||   ||||||   | |  ||    |  ||||  |  ||   ||| |  |             || 
GAGAGTTGCATACTACATCGCTGAAGCACTGGAGTATTGCAGCACTGAGGGAAGGCCTTTGTACCACGACCTAAATGCATATAGGGTCCTCTTTGATGAGgt-----aactgttcctttggttttcacttttccttacagc-cctcgagttatatggagaactgccaataggcta--tagtagcttaa-agctaagcaaatgcggataa

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGAGTAGCCCTTTTCATTGCTGAAGCCTTGGATTTTTGTAGTACTGAAAGCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGgtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagcta-ggtgataatctaatattttg-attggactttgtag
| ||||||    || ||| ||||| || ||||||| ||||||||||||  | ||| |||||||||| ||| ||||||| ||||||||||||||||| |||||  ||| ||    | | ||||||| |       |||  |||| |  |||| ||    ||    ||| | | |  ||||   | | | ||| ||| | || |  | ||||
GCGAGTAGGATATTACATAGCTGAGGCTTTGGATTATTGTAGTACTGAGGGTCGTCCATTGTACCATGATTTGAATGCTTATAGGGTTCTCTTTGATGAGgtattattat----tttcttctcaaga-------gttatttatttcgtgtt-taagagatgccctgtctcgttgcggtgcctaacaagtatattggaatgaatatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128409|gb|CB913748.1|CB913748
EST:     GCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAG                         GATGGCGACCCACGG
genomic: GCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGgtgctataat ... gactttgtagGATGGTGACCCACGG