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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGCTTATCTGTATTTTAACCGCTTTGCGGAGCTTTTGGTTCACAAGCCTGGTGAAGGCTTCTTTCTGAGTCTCCTAGCTACCATTCTTTCACCTTTGgtacagctccatagacttacaaatatgtgcctgaaatatagaattaattctcggttaattaagctgtatataattaattattgtctaatctttggacag

Basic information

species Vitis vinifera
transcript Vv03s0038g03140.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g10180.1 (Oryza sativa), 5'ss of exon 1
--TCTAGCTTATCTGTATTTTAACCGCTTTGCGGAGCTTTTGGTTCACAAGCCTGGTGAAGGCTTCTTTCTGAGTCTCCTAGCTACCATTCTTTCACCTTTGgtacagctc---catagacttacaaatatgtgcct-gaaatatagaattaattctcggt--taattaa--gctgtatataattaattattgtctaatctttggacag
  || ||    |    |  | |  ||  | || ||| |  ||||||||||||||||||||||| || | |||||||| || || || || ||  ||||  |||||   |||   || ||     | |   |||     ||||     |||  ||  ||  |  |  ||||  | |  || | |  |   ||||  |   |||  |    
CCTCCAGAACCTTACCACGTCA--CGGCTGGCCGAGGTGATGGTTCACAAGCCTGGTGAAGGCCTCCTCCTGAGTCTTCTCGCCACAATGCTGACACCACTGgtagcactcaaccacagttaatccatcttgtaagaagaaacgctaaatagatcgtcactaatcgttaacagttcaatttcacaacccattgatt--ccttcag----