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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcattctttgcacgagtactggtcattgatatatgttgttatacagctagggcagtattactaagcacttactacttagtagaactggagttgga...

Basic information

species Vitis vinifera
transcript Vv03s0038g02650.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G24100.1 (Glycine max), 5'ss of exon 3
TATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcattctttgcacg-agtactggtc-----attgatatatgttgttatacagctagggcagtattactaagcacttactacttagtagaactggagttgga
 |||||| |||| ||||||||||||||| ||   || || || |||    | ||||| |||||||||||||||||||||||||| | ||||||||| || |||| ||| |  | || |  | || || |       ||| || |  | |||||  | ||     |  |  |||   ||| |    |||| ||  | |  |  |   
GATAGAGACTGTAAGACAGGAGCTGCATGCTTCACATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAgtaagtcacttgtagctcataatattgcttttctagttgctagagatggttatttatcttttctataaacacttcacacct----cttaatatcattttaaatt--

upper sequence: Vv03s0038g02650.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G42910.1 (Glycine max), 5'ss of exon 3
TATAGAGTCTGTTAGACAGGAGCTGCATTCTCTGCACCCGGACGACAATCAAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcattctttgcacg-agtactggtcattgatatatgttgttatacagctagggcagtattactaagcactt---actacttagtagaactggagttgga
 ||||||||||| ||||||||||||||| ||  ||| || || |||    | ||||| |||||||||||||||||||||||||| | ||| ||||| || |||| ||| | || || |  | |  || |  |  |  |   | |  ||  |  |    |  |  || ||| |||||   ||  |||| ||  | |  |  |   
GATAGAGTCTGTAAGACAGGAGCTGCATGCTTCGCATCCTGATGACCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGTCTTATTCAAgtaagtcacttttagctcataatgttgcttttctagttgc-tagagatggatatttatcttttcta-taaacacttcacacctcttaatatcattttaaatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864084|gb|DT013139.1|DT013139
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTT
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTT
EST: gi|71864104|gb|DT013159.1|DT013159
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
EST: gi|110684850|gb|EE062597.1|EE062597
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
EST: gi|110358630|gb|EC922982.1|EC922982
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
EST: gi|294966370|gb|GW839477.1|GW839477
EST:     AATTGTAGTTTTAAACGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AATTGTAGTTTTAAA-GCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
EST: gi|110699642|gb|EE076817.1|EE076817
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
EST: gi|71859158|gb|DT008213.1|DT008213
EST:     AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAG                         ATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG
genomic: AAATTGTAGTTTTAAAGCATAATGTATGGCGTGTAAGGGGCCTTATACAGgtaactcatt ... tcttttacagATTACTAGGTCTATTGGTGATGTATATTTAAAAAAGGCTGAGTTCAACAGG