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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCGGACCAAGGTTTTCCATCCAAACATTAACAGCAATGGAAACATCTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatcttggagactgggcccattttattttaatatagcagatggtggaagactagaacccgatacctccagataatcaaaacactaatactatatt...

Basic information

species Vitis vinifera
transcript Vv03s0038g02390.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34549952|gb|CF518184.1|CF518184
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|71877171|gb|DT026226.1|DT026226
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|51051778|gb|CO819228.1|CO819228
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|77582031|gb|DV219963.1|DV219963
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34550937|gb|CF519145.1|CF519145
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|71868658|gb|DT017713.1|DT017713
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|77583982|gb|DV221032.1|DV221032
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|33408348|gb|CF213975.1|CF213975
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|32460490|gb|CD801664.1|CD801664
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|71867875|gb|DT016930.1|DT016930
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34547642|gb|CF515874.1|CF515874
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|77581479|gb|DV219673.1|DV219673
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34550174|gb|CF518392.1|CF518392
EST:     GCTTGGACATACTCAAGGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|110386745|gb|EC951366.1|EC951366
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|110386122|gb|EC950696.1|EC950696
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|30325323|gb|CD008585.1|CD008585
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34549872|gb|CF518104.1|CF518104
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|71876887|gb|DT025942.1|DT025942
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|110382809|gb|EC947130.1|EC947130
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34547559|gb|CF515791.1|CF515791
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|46919416|gb|CN548745.1|CN548745
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|110371354|gb|EC935314.1|EC935314
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|110378541|gb|EC943678.1|EC943678
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34550822|gb|CF519038.1|CF519038
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
EST: gi|34550057|gb|CF518289.1|CF518289
EST:     GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAG                         GTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT
genomic: GCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatct ... attcttgcagGTTTTACTCTCCATTTGTTCACTGCTCACTGATCCTAACCCTGATGACCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCCGGACCAAGGTTTTCCATCCAAACATTAACAGCAATGGAAACATCTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCACTCACCATATCCAAGgtagtgatcttggagactgggcccattttattttaatatagcagatggtggaagactagaacccgatacctccagataatcaaaacactaatactatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca