Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGTTGGAGAGGTTGCAAACTTTGTTGCCTACGTTTATGCTCCAGCAGTTCTGGTGACCCCCCTTGGTGCGTTGAGTATAATTATTAGgtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatag

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 3
TGATTGTTGGAGAGGTTGCAAACTTTGTTGCCTACGTTTATGCTCCAGCAGTTCTGGTGACCCCCCTTGGTGCGTTGAGTATAATTATTAGgtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatag
||||| |||| ||| |||||||||||||||| ||  | |||||||| ||||||||||| || |||||||||||  | ||||| ||| | ||||| |     || |      ||  | ||| ||||  | |                  ||||||| | ||| | |   ||| |||||||||||| |  | ||| |||   |||
TGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactc---tagctttaattaaaattttgattgttttgat-----------------gaattttgtgtttgtgtgg-attgtagaactaacatatccggtatgtgttgctag