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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttttgttgtgtactgtcaacttgtttttcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00460.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G04210.1 (Glycine max), 5'ss of exon 3
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgact-ttgttttgttgtgtactgtcaacttgtttttcag
|||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||| |||||||||      || | |        || |||| | |   || ||  | |  |   |||| |  |  | | | |||  || || | |||  | | ||| |||  |||
CATTATCAAAGGGATATTGTTCGTGGTGTAGAAGGTTATATTGTTACTGGATCCAAGCAAGTGGAAATAGgta----agtaata--------ttggtttataaagcttctatataagtttgttgcagaaaatgttattattgaattcttctataccattatcttatttaacag

upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G11950.3 (Glycine max), 5'ss of exon 3
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttttgttgtgtactgtcaacttgtttttcag
|||| |||||||||||||||||| ||||||||||||| ||| ||||| |||||||| ||||| |||||||||  | |  |||| ||| |   |   ||| || |    |  | |   || | || |     ||  |  || |||    |                       
CATTATCAAAGGGATATTGTTCGAGGTGTAGAAGGTTATATTGTTACCGGGTCCAAGCAAGTGGAAATAGgtaaggttatgaagcttctatataactttgttgcagaaaacact---attattgaactcctctatatcttatttaacag-----------------------

upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G01100.2 (Glycine max), 5'ss of exon 3
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttttgttgtgtactgtcaacttgtttttcag--
|||| ||||||||||||||| |||||||| ||||||| ||| || ||||| ||||| |||||||||||||||  ||   |     |  |||  || || ||| |  ||||   |  |||  ||    | | | |  ||||| | |  |||| |  |  ||           |  
CATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatt-ttctttgcagttatttatggaatatat-tgtatgtcatagctttgatat-ctgtgcag-gagaagaaaaaggagggtg

upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 3
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttttgttgtgtactgtcaacttgtttttcag
|||| ||||||||||||||| || ||||| ||||||| ||| || ||||| ||||| |||||||||||||||  ||   |     |  |||  || |  ||| |  |||   |    |  |  |   | | | |   |||  | ||| |         ||   |||     |
CATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatt-tcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgt-gcaagagaagaaaaagttgggtgg

upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 5'ss of exon 3
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttt-------tgttgtgtactgtcaacttgtttttcag---
||||  ||||| ||||||||||||||||| ||||||| ||| ||||| ||||| |||||||||||||||||||  ||  |  | | ||||| ||| |   ||| | |  |  || |  ||  ||  |  ||||||| || | |        |||  |  | | |  |||  |||||||    
CATTACCAAAGAGATATTGTTCGTGGTGTGGAAGGTTATATAGTTACAGGGTCAAAACAAGTTGAAATAGgtgatttttttgaccctttgagttt-taacttattgtattttttta--tgtctgttatagacttgaattggctcacaggcctgtctttcattttgcactcatttttcatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024745|gb|FQ430570.1|FQ430570
EST:     TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAG                         GAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
genomic: TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggt ... tgtttttcagGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
EST: gi|351035615|gb|FQ463460.1|FQ463460
EST:     TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAG                         GAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
genomic: TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggt ... tgtttttcagGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
EST: gi|349826387|gb|FQ417884.1|FQ417884
EST:     TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAG                         GAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
genomic: TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggt ... tgtttttcagGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
EST: gi|351023475|gb|FQ432858.1|FQ432858
EST:     TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAG                         GAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
genomic: TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggt ... tgtttttcagGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
EST: gi|351040290|gb|FQ425376.1|FQ425376
EST:     TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAG                         GAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA
genomic: TCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggt ... tgtttttcagGAACAAAATTGTCAGAAGATTGCAGGAAATATGGTGTTGAAAATACTTGTA