Sequence
atgc intronic sequence ATGC exonic sequenceTATTACTATGAGGTTGGATCTGGACACGTTAGGAGGAAATTTTGGTTTGTGACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGgtaactattcttcatcaatgaattcaatggagattgctaatgatgggtaaaactttaccattcggatttgattcaaccattgggtatgtgaatcagagag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 3
TATTACTATGAGGTTGGATCTGGACACGTTAGGAGGAAATTTTGGTTTGTGACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGgtaactattcttcatcaatgaattcaatggagattgctaatgatgggtaaaactttacc--attcggatttgattca-accattgggtatgtgaatcagagag--
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TACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGgtag-tattcaatattcctaaattcattt----ttgctatgtcaggatacacattcaccaaatctataaacgatctatatcactgaaaacaacatctgtattcag
upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 3
TATTACTATGAGGTTGGATCTGGACACGTTAGGAGGAAATTTTGGTTTGTGACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGgtaactat-tcttcatcaatgaattcaatgga-gattgcta-------atgatgggtaaaactt-taccattcggattt-gattcaaccattgggtatgtgaatcagagag-------------------
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TATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAATTTTGGTTTGTGACTCCTCCTGAAGTTCACCCTGATGCGCCTTATACATTTGGTCTCATTGgcaagtttatattctctcaaaactacaatgtttggttgctttacacttactttttgtaaacccaatactattgacattgaggtttaagaatgccaaatttaatttttagatgattgggctttctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857647|gb|DT006702.1|DT006702EST: GACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAG GTGATCTTGGTCAGACTTATGATTCAAATATGACGCTT
genomic: GACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGgtaactattc ... ttgttttcagGTGATCTTGGTCAGACTTATGATTCAAATATGACGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTACTATGAGGTTGGATCTGGACACGTTAGGAGGAAATTTTGGTTTGTGACTCCCCCTGAAGTTGGCCCGGATGTTCCATATACTTTTGGTCTTATAGgtaactattcttcatcaatgaattcaatggagattgctaatgatgggtaaaactttaccattcggatttgattcaaccattgggtatgtgaatcagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa