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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattttttgtctcaggtttggtggacagattctttgtaacttgatttggattgttcctcagaatatactttt...

Basic information

species Vitis vinifera
transcript Vv03s0038g00160.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G01180.2 (Glycine max), 5'ss of exon 2
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattt--tttgtctcaggtttggtggacagattctttgtaacttgatttggat-tgttcctcagaatatactttt
|||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||| ||||       |  |      || |  ||   ||| |  || || || |     | ||  || ||  ||  | || || ||||||      |  ||| | 
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGgtaagtttcacatgtaaggtgatatttatcttcaatttattccacgtctgctctgttgttttgttttatgtt--tctgtatctgttccattttctggactct-

upper sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattt--tttgtctcaggtttggtggacagattctttgtaacttgatttggattgttcctcagaatatactttt
|||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||| |||| ||||   |   |  |      ||||  |||  ||| |  |  || ||       | ||  || ||  ||  | |||| | |           | || | 
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattccgtgtctgccctgttgttttgttttatgtt--tctggactctggtatgttcagttctgta

upper sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S171_11V6.1 (Physcomitrella patens), 5'ss of exon 3
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattttttgtctcaggtttggtggacagattct-ttgtaacttgatttggattgttcctcagaatatactttt---
||| ||||| |||||||||||||||||||||||  |  | ||| || | ||  |  | ||||  || |||||||  | ||  ||  | ||| ||      |  |||  | |  | |      | | |||| || | ||   | |   |    | |    | ||| ||      
GTACTGTAAGTGCGAGATGCCTTACAACCCCGACCATGTGATGCTGGAATGCAACAGTTGCAAAGACTGgtgag--acttcgttgcgtccttttcgctcatcattgaattacttctcagctgcggcttctgttatgacgcaaatctcaca--tgcgtgaagtatcctccatgt

upper sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ26805 (Selaginella moellendorffii), 5'ss of exon 3
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattttttgtctcaggtttggtggacagattctttgtaacttgatttggattgttcctcagaatatactttt
||| || || |||||||||||||||||||| ||||| || |||||||||||||||| |||||  || |||| ||  ||  | ||    |   |  || |   || |   |   |  | || | | | |    |                                    
GTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTGgtaaga-atcagtttctctcaaatccaaaagccttggcagc--ctccgatgaaaaaaatggcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27582108|gb|CB004803.1|CB004803
EST:     CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTG                         GTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
genomic: CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatt ... tttgattcagGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
EST: gi|110389058|gb|EC953869.1|EC953869
EST:     CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTG                         GTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
genomic: CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatt ... tttgattcagGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
EST: gi|110391870|gb|EC956881.1|EC956881
EST:     CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTG                         GTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
genomic: CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatt ... tttgattcagGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
EST: gi|32458903|gb|CD800077.1|CD800077
EST:     CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTG                         GTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
genomic: CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatt ... tttgattcagGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
EST: gi|71875325|gb|DT024380.1|DT024380
EST:     CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTG                         GTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA
genomic: CCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatt ... tttgattcagGTTTCATCCTGCTTGTATAGACATGACTCCAGAGGAAGCTAAAAGACTCGA