Sequence
atgc intronic sequence ATGC exonic sequenceATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatgtcttatacatcagtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G32980.1 (Glycine max), 5'ss of exon 3
ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatgtcttatacatcagtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag----------
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GTTCTGGAGTATTGGGTTGGCAGGGGTATGCTGCAGATTTTgtacgtttt-cgcttta-tga-----tgcttacttttgcttgttgcttaggttatct---tggttttcttcttagtccttaacagtgacaccttacacaacaataaaata
upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G30080.2 (Glycine max), 5'ss of exon 2
-----------------------------------------------------------ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatgtctt-------ataca---tcagtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag
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TTTAACACTCGTGCTGTTTCGCATGCTCCGTTATGATATAATTGAATGGTCCTTTACAGGTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTgtacgcgttcctttcgatttactctaaattatatgatgcttacttccactacgctctaatttaacttacctgttaaatcatgtgatctcataatcatttg----------
upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G30080.1 (Glycine max), 5'ss of exon 3
ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatg---tcttatacatc-------agtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag
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GTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTgtacgcgttcctttcgatttactctaaattatatgatgcttacttccactacgctctaatttaacttacctgttaaatcatgtgatctcataatcatttg----------
upper sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G07230.1 (Glycine max), 5'ss of exon 3
ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgta--tgtcttatacatcagtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag---
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GTTTTGGAGTATTGGGCTGCCAGGGGTATGCTGCAGATCTTgtacgtgttcctttcgattttctctaaattatgatgcttacttccactacg---ttctaatttaacttatctgttaaatcatg--cgatctcataatcacatgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706214|gb|FC054972.1|FC054972EST: ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTT TGTTGCAGTGATGACAAGAGCTTTTCCTAATGAATCTAGTAAGCAGAAGGA
genomic: ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatgtctta ... ctctcttcagTGTTGCAGTGATGACAAGAGCTTTTCCTAATGAATCTAGTAAGCAGAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTTGGAGTATTGGGCTGGCAGGGGAATGCTGCAGATTTTgtatgtcttatacatcagtgaaaaagttttcacttttgcctcttcagaaaacttcttccctaaaaattttcttagttttggattagtttcccatgcccag
- TTGGAG
- - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatt