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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGgtatgctgttgttcacactaaaatttctttttcttttcttaagtctggtcacatgaatttaattcttggtacattatttttacactttaaaactaacatcagtcttataattgaatatgcataaatcttgttctcag

Basic information

species Vitis vinifera
transcript Vv03s0017g00490.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 4
GGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGgtatgctgt-tgttcacactaaaatttctttttcttttcttaagtctggtcacatgaatttaattcttggtacattatttttaca------ctttaaaactaacatcagtcttataattgaatat--------gcataaatcttgttctcag
||||||||| | ||||||||||||||| || ||||| |||||||| |||||  | || ||||| || || ||||| || |||||||| ||||||||||||||| || |  | ||||   |    ||| ||||  |||    |   ||| |    |   ||| ||  |    || | | ||| |||      |||  | | | |||  | |||||| |  ||||||          ||| || || || | ||
GGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagcatattcatcatgttctttattttcttttgtacacaactgctacttt---ttttatattgcaaacttaaatttcacaaaacctcttgcatattgacaaaaatcttatgacagaatatctttatttatatatatattttttttag

upper sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G07250.1 (Glycine max), 5'ss of exon 4
GGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGgtatgctgttgttcacactaaaatttctttttcttttcttaagtctggtcacatgaatttaattcttggtacattatttttacactttaaaactaacatcagtcttataattgaatatgcataaatcttgttctcag
||||||||| | ||||||||||||||| || |||||  ||||||| |||||  | || || || || || ||||| || |||||||| ||||||||||||||| || |   |   ||| |   | | | |||||||| |  |   | |  || |   ||| ||  |    || | | ||| |||    ||| ||       |  |  | |   |||||   ||    || || | ||
GGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAAATGTTACAAAGTATTTGAACTTTAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGgtaggcagc-atattcaccatgttctttatttcttttgtacacaattgctacttt--ttttatattgcaaacttaaatttcaca----aaacct----cttgcatattgacataatatcttta---tttatttttag