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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagatgattttgttttgggatttttggtttttgcaattagtttgtgatttctttatatgtttgttttatgctgttgattcag

Basic information

species Vitis vinifera
transcript Vv02s0154g00500.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G04580.1 (Glycine max), 5'ss of exon 3
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagatgattttgttttgggatttttggtttttgcaattagtttgtgatttctttat-atgtttgtt--ttatgctgt-tgattcag---------------------------------------------------
||||||||||| ||||||||||||||||||||||||||||| || || ||||||  ||| || || || |||||  |  | |||||| | |  ||| ||| ||  |     ||  |   ||||    ||  |||    ||||||| | |  |||| |  ||||||| | ||    ||                                                   
GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGTATTGTCACGCCACGATCTACGTGTGATGTTATCGgtactaatat-gattattctgaatccattttgctaccttttttttttctttttctttttcttttttaaatttggtagttatgctttatggccgagtaatgaattgggggcttttttttttctttctaaattatgtatgaatggaag

upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G15010.1 (Glycine max), 5'ss of exon 3
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagat-----gattttgttttgggatttttggtttttgcaattag---tttgtgatttctttatatgtttgttttatg--ctgttgattcag--------------------
||||||||||| ||||||||||||||||||||||||||||| || ||  |||||  |||||| || || |||||  |  | |||||| | |  | |     || |   ||||   |  |||  |||||  ||  |    || ||  ||    | ||||   |  | |||   ||  || |                       
GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatatggttattctgaatccatttttctaccttttttttttaaaaaaaaaaattggtagttatgctttatggccgagtaatgaattggggactttttttgtgtgtgtgaatggaag

upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G41900.1 (Glycine max), 5'ss of exon 3
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagatg----attttgttttgggatttttg-gtttttgcaattagtttgtgatttcttta-tatgtttgttttatgctgttgattcag---
||||||||||| ||||| |||||||||||||||||||| || |||||| | ||| |||| |  ||  |||||||  |  | |||||| |   | ||     | | ||  ||   || | |   | | |  |  ||     | |||| |||| ||    | | ||||  |    | |||    
GTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAACACCGGAGTAGTCATGCCACAATCTGCATGTGATGTTATTGgtactaatgcaaatacaatactctgcattaatatatatatatatatatatatatccatttatttgtttaatagtaatttattattttaccaactcatatt

upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G03480.2 (Glycine max), 5'ss of exon 3
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagatgattttgttttgggatttttggtttttgcaattagtttgtgatttctttatatgtttgttttatgctgttgattcag--------------------
||||||||||| ||||| |||||||||||||||||||| || |||||| | ||| |||| |  || ||||||||  |  | |||||| |   | ||       |  || |  ||    | | | || ||| |||||    |  | || | ||  ||||       ||  |  |                    
GTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAACACCGGAGTAGTCATGCCACAATCTACATGTGATGTTATTGgtactaatgcaaatacaacaatagtgtgcattaatatatatccattta-tttgtttaatagtaatttatt-attttgaatcaatggcttggtgatatttgatattttacag